View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8084_low_15 (Length: 268)

Name: NF8084_low_15
Description: NF8084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8084_low_15
NF8084_low_15
[»] chr3 (17 HSPs)
chr3 (58-268)||(1458916-1459132)
chr3 (1-59)||(45182959-45183017)
chr3 (1-57)||(6890978-6891034)
chr3 (1-57)||(6931025-6931081)
chr3 (1-56)||(33040934-33040989)
chr3 (4-54)||(6503703-6503753)
chr3 (7-55)||(5354691-5354739)
chr3 (1-57)||(19565632-19565688)
chr3 (1-56)||(45335856-45335911)
chr3 (1-59)||(35514244-35514302)
chr3 (1-54)||(11018343-11018396)
chr3 (1-50)||(27935165-27935214)
chr3 (1-37)||(34084253-34084289)
chr3 (1-36)||(22968575-22968610)
chr3 (1-36)||(39771791-39771826)
chr3 (1-37)||(19390146-19390182)
chr3 (25-57)||(48757896-48757928)
[»] chr8 (10 HSPs)
chr8 (1-58)||(23402087-23402144)
chr8 (1-56)||(2729327-2729382)
chr8 (1-58)||(36408530-36408587)
chr8 (1-51)||(4403994-4404044)
chr8 (1-51)||(16788156-16788206)
chr8 (1-50)||(34136956-34137005)
chr8 (1-36)||(39914516-39914551)
chr8 (1-50)||(10397171-10397220)
chr8 (1-54)||(34844746-34844799)
chr8 (1-37)||(15838286-15838322)
[»] chr4 (31 HSPs)
chr4 (1-58)||(6690366-6690423)
chr4 (1-57)||(49908783-49908839)
chr4 (1-59)||(5517495-5517553)
chr4 (1-57)||(3293027-3293083)
chr4 (1-56)||(30216873-30216928)
chr4 (1-54)||(7769311-7769364)
chr4 (1-54)||(43143715-43143768)
chr4 (1-58)||(50205208-50205265)
chr4 (1-57)||(6212029-6212085)
chr4 (1-57)||(10353015-10353071)
chr4 (1-55)||(17554978-17555032)
chr4 (4-57)||(13393004-13393057)
chr4 (4-57)||(13396143-13396196)
chr4 (1-57)||(12680193-12680249)
chr4 (1-53)||(50720477-50720529)
chr4 (1-36)||(13012189-13012224)
chr4 (1-36)||(20129311-20129346)
chr4 (2-57)||(30077763-30077817)
chr4 (1-48)||(30109945-30109992)
chr4 (1-36)||(47500774-47500809)
chr4 (1-55)||(26448035-26448089)
chr4 (1-54)||(29996114-29996167)
chr4 (5-57)||(27363341-27363393)
chr4 (1-37)||(36382476-36382512)
chr4 (1-36)||(26439410-26439445)
chr4 (1-36)||(34407415-34407450)
chr4 (1-51)||(42333907-42333957)
chr4 (1-54)||(48989311-48989364)
chr4 (1-37)||(25930708-25930744)
chr4 (1-57)||(28877381-28877437)
chr4 (25-57)||(37236646-37236678)
[»] chr2 (15 HSPs)
chr2 (1-58)||(8147330-8147387)
chr2 (1-57)||(45418563-45418619)
chr2 (1-56)||(44084734-44084789)
chr2 (7-57)||(34523220-34523270)
chr2 (3-57)||(26237937-26237991)
chr2 (2-56)||(770975-771034)
chr2 (1-37)||(42439986-42440022)
chr2 (1-36)||(6403935-6403970)
chr2 (1-60)||(8059464-8059523)
chr2 (1-34)||(41251765-41251798)
chr2 (1-37)||(2958231-2958267)
chr2 (1-37)||(32127272-32127308)
chr2 (26-57)||(12756981-12757012)
chr2 (1-37)||(17445170-17445206)
chr2 (1-37)||(35962715-35962751)
[»] chr5 (15 HSPs)
chr5 (1-57)||(31680347-31680403)
chr5 (1-58)||(17332682-17332739)
chr5 (1-57)||(12278991-12279047)
chr5 (1-57)||(31501847-31501903)
chr5 (7-57)||(26543902-26543952)
chr5 (1-54)||(37254624-37254677)
chr5 (1-55)||(202621-202675)
chr5 (1-57)||(36291351-36291407)
chr5 (1-35)||(1776507-1776541)
chr5 (25-59)||(15917015-15917049)
chr5 (25-58)||(4307238-4307271)
chr5 (1-57)||(13817957-13818013)
chr5 (1-37)||(39434696-39434732)
chr5 (1-36)||(26283449-26283484)
chr5 (1-57)||(10033907-10033963)
[»] chr7 (17 HSPs)
chr7 (1-57)||(8867862-8867918)
chr7 (5-59)||(7002703-7002757)
chr7 (5-59)||(7048574-7048628)
chr7 (1-54)||(34389187-34389240)
chr7 (1-57)||(33685544-33685600)
chr7 (1-57)||(43184599-43184655)
chr7 (1-56)||(37002275-37002330)
chr7 (8-57)||(26624725-26624774)
chr7 (1-58)||(37966614-37966671)
chr7 (1-37)||(5555487-5555523)
chr7 (1-37)||(8394125-8394161)
chr7 (1-57)||(10876838-10876894)
chr7 (1-37)||(36630816-36630852)
chr7 (1-36)||(14777238-14777273)
chr7 (1-34)||(3114227-3114260)
chr7 (25-54)||(38826584-38826613)
chr7 (27-59)||(36658171-36658203)
[»] chr6 (11 HSPs)
chr6 (1-57)||(13646997-13647053)
chr6 (1-57)||(28996710-28996766)
chr6 (1-57)||(34385519-34385575)
chr6 (1-59)||(21149332-21149390)
chr6 (1-51)||(31028495-31028545)
chr6 (1-53)||(24697948-24698000)
chr6 (1-57)||(29743263-29743319)
chr6 (1-36)||(398618-398653)
chr6 (1-57)||(2753330-2753386)
chr6 (1-37)||(18339106-18339142)
chr6 (1-37)||(34948889-34948925)
[»] chr1 (12 HSPs)
chr1 (1-56)||(31866958-31867013)
chr1 (1-54)||(35907535-35907588)
chr1 (1-57)||(44352614-44352670)
chr1 (1-36)||(26144256-26144291)
chr1 (1-54)||(321508-321561)
chr1 (1-57)||(17445293-17445349)
chr1 (1-57)||(41972406-41972461)
chr1 (1-54)||(3828967-3829020)
chr1 (20-57)||(33489667-33489704)
chr1 (1-58)||(48901236-48901292)
chr1 (25-53)||(10907613-10907641)
chr1 (1-37)||(32982187-32982223)
[»] scaffold0769 (1 HSPs)
scaffold0769 (7-55)||(1259-1307)
[»] scaffold0154 (1 HSPs)
scaffold0154 (1-57)||(31460-31516)
[»] scaffold0012 (1 HSPs)
scaffold0012 (7-44)||(194021-194058)
[»] scaffold0002 (1 HSPs)
scaffold0002 (1-36)||(480588-480623)
[»] scaffold0502 (1 HSPs)
scaffold0502 (1-37)||(5230-5266)
[»] scaffold2142 (1 HSPs)
scaffold2142 (1-36)||(523-558)


Alignment Details
Target: chr3 (Bit Score: 161; Significance: 6e-86; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 161; E-Value: 6e-86
Query Start/End: Original strand, 58 - 268
Target Start/End: Complemental strand, 1459132 - 1458916
Alignment:
Q  58 atcacatcaccaatctatcatatatctatcacaagggtctct--gaaaattttaggtgagttggatttcgaaaactaaccaagtcagacatcaaagttaa 155  Q
    ||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||    
T  1459132 atcacatcaccaatctatcatatatctatcacaagggtctctatgaaaattttaggtgagttggatttcggaaactaaccaagtcagacatcaaggttaa 1459033  T
Q  156 gagagcactta----caaagatacttacaaatcatcgaccaaagagattctcgtactaaaagtagaagttaaactgatcaccattgtaaagtacgagtca 251  Q
    |||||||||||    ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||| |||||||||||||||||||||||    
T  1459032 gagagcacttaattacaaagatacttacaaatcatcgaccaaagagatcctcgtgctaaaagtagaagttgaactggtcaccattgtaaagtacgagtca 1458933  T
Q  252 actacttaccggttgaa 268  Q
    |||||||||| ||||||    
T  1458932 actacttaccagttgaa 1458916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 45183017 - 45182959
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctgat 59  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  45183017 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccttgat 45182959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 6891034 - 6890978
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  6891034 attatcgatcgagcccgggcgaccgcccggtgtcgccgggcggtgaaaccgcccctg 6890978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 6931025 - 6931081
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  6931025 attatcgatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctg 6931081  T

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Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 33040989 - 33040934
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccct 56  Q
    |||||| |||||||||| ||||||||||||||||||||||||||||||||||||||    
T  33040989 attatcaatcgagcccgagcgaccgcccggggtcgccgggcggtgaaaccgcccct 33040934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 4 - 54
Target Start/End: Original strand, 6503703 - 6503753
Alignment:
Q  4 atcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 54  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6503703 atcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 6503753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 5354739 - 5354691
Alignment:
Q  7 gatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccc 55  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5354739 gatcgagcccgggcgaccgcccggggtcgccgggcggtgaaactgcccc 5354691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 19565632 - 19565688
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    ||||||||| || |||||||||||||||||| |||||||||||||||||||||||||    
T  19565632 attatcgattgaacccgggcgaccgcccgggatcgccgggcggtgaaaccgcccctg 19565688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 45335911 - 45335856
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccct 56  Q
    ||||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||    
T  45335911 attatcgattgagtccgggcgaccgcccgaggtcgccgggcggtgaaaccgcccct 45335856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 35514302 - 35514244
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctgat 59  Q
    |||||||||||||||||| |||||| ||||||||||||||||||||||| |||| ||||    
T  35514302 attatcgatcgagcccggacgaccgtccggggtcgccgggcggtgaaactgcccttgat 35514244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 11018343 - 11018396
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 54  Q
    ||||||||||||||| |||||||||||||| |||||||| ||||||||||||||    
T  11018343 attatcgatcgagcctgggcgaccgcccggagtcgccggacggtgaaaccgccc 11018396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 27935214 - 27935165
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaacc 50  Q
    ||||||||||||||||||||||| |||| |||| ||| ||||||||||||    
T  27935214 attatcgatcgagcccgggcgactgcccagggttgccaggcggtgaaacc 27935165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34084253 - 34084289
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgcc 37  Q
    ||||||||||||| |||||||||||||||||||||||    
T  34084253 attatcgatcgagtccgggcgaccgcccggggtcgcc 34084289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 22968575 - 22968610
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgc 36  Q
    |||||||||||||||||| |||||||||||||||||    
T  22968575 attatcgatcgagcccggacgaccgcccggggtcgc 22968610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 39771826 - 39771791
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgc 36  Q
    |||||||| |||||||||||||||||||||||||||    
T  39771826 attatcgaccgagcccgggcgaccgcccggggtcgc 39771791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 19390182 - 19390146
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgcc 37  Q
    |||||||||||| ||||| ||||||||||||||||||    
T  19390182 attatcgatcgaacccggacgaccgcccggggtcgcc 19390146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 48757896 - 48757928
Alignment:
Q  25 gcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    ||||||||||| |||||||||||||||||||||    
T  48757896 gcccggggtcgacgggcggtgaaaccgcccctg 48757928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 23402144 - 23402087
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctga 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23402144 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctga 23402087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 2729327 - 2729382
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccct 56  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2729327 attatcgatcgagcccgggcgtccgcccggggtcgccgggcggtgaaaccgcccct 2729382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 36408587 - 36408530
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctga 58  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||    
T  36408587 attatcgatcgagcccgggcgaccgcccgaggtcgccgggcggtgaaaccacccctga 36408530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 4404044 - 4403994
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccg 51  Q
    ||||||||||||||||||||||||||| ||||||||||| | |||||||||    
T  4404044 attatcgatcgagcccgggcgaccgcctggggtcgccggccagtgaaaccg 4403994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 16788156 - 16788206
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccg 51  Q
    ||||||||||||||||||||||||||||||||| |||||||  ||||||||    
T  16788156 attatcgatcgagcccgggcgaccgcccggggttgccgggcaatgaaaccg 16788206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 34136956 - 34137005
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaacc 50  Q
    |||||||||||||||||||||||||| |||||||||| | ||||||||||    
T  34136956 attatcgatcgagcccgggcgaccgctcggggtcgccagacggtgaaacc 34137005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 39914551 - 39914516
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  39914551 attatcgatcgagcccgggcgaccgcccggggtcgc 39914516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 10397171 - 10397220
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaacc 50  Q
    ||||||||| ||||||||||||  |||||| |||||||||||||| ||||    
T  10397171 attatcgattgagcccgggcgagtgcccggagtcgccgggcggtgtaacc 10397220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 34844799 - 34844746
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 54  Q
    |||||||||||||||| ||||||||||  ||||||||| ||||  |||||||||    
T  34844799 attatcgatcgagcccaggcgaccgcctagggtcgccgagcggcaaaaccgccc 34844746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 15838322 - 15838286
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgcc 37  Q
    |||||| |||||||||||| |||||||||||||||||    
T  15838322 attatcaatcgagcccgggtgaccgcccggggtcgcc 15838286  T

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Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 31)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 6690366 - 6690423
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctga 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6690366 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctga 6690423  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 49908783 - 49908839
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49908783 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 49908839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 5517495 - 5517553
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctgat 59  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  5517495 attatcgatcgagcccaggcgaccgcccggggtcgccgggcggtgaaaccgcccctgat 5517553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 3293027 - 3293083
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    |||||||||||||||||||||||||||||||||| | ||||||||||||||||||||    
T  3293027 attatcgatcgagcccgggcgaccgcccggggtcactgggcggtgaaaccgcccctg 3293083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 30216873 - 30216928
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccct 56  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  30216873 attatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaatccgcccct 30216928  T

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Target: chr4; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7769364 - 7769311
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 54  Q
    ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||    
T  7769364 attatcgatcgagcccgggcgaccgcctggggtcgccggacggtgaaaccgccc 7769311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 43143715 - 43143768
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 54  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||    
T  43143715 attatcgatcgagcccgggcgaccgcccggggtcgtcggacggtgaaaccgccc 43143768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 50205208 - 50205265
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctga 58  Q
    |||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||    
T  50205208 attatcgatcgagctcgggcgaccgcccgggatcgccggacggtgaaaccgcccctga 50205265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 6212029 - 6212085
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    |||||||||||||| |||||||||||||| ||||||||| |||||||||||||||||    
T  6212029 attatcgatcgagctcgggcgaccgcccgaggtcgccggacggtgaaaccgcccctg 6212085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 10353015 - 10353071
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    ||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||    
T  10353015 attatcgattgagcccgggcgaccgccaggggtcgccggacggtgaaaccgcccctg 10353071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 17555032 - 17554978
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccc 55  Q
    |||||||||||||||||||||||| |||||||||| ||| |||||||||||||||    
T  17555032 attatcgatcgagcccgggcgaccacccggggtcgtcggacggtgaaaccgcccc 17554978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 13393004 - 13393057
Alignment:
Q  4 atcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    |||||| ||||||||||||||| |||||||||| ||||||||||||||||||||    
T  13393004 atcgattgagcccgggcgaccgtccggggtcgctgggcggtgaaaccgcccctg 13393057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 4 - 57
Target Start/End: Original strand, 13396143 - 13396196
Alignment:
Q  4 atcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    |||||| ||||||||||||||| |||||||||| ||||||||||||||||||||    
T  13396143 atcgattgagcccgggcgaccgtccggggtcgctgggcggtgaaaccgcccctg 13396196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 12680193 - 12680249
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    |||||||||||||||||||| |||||| ||||| || ||||||||||||||||||||    
T  12680193 attatcgatcgagcccgggccaccgcctggggttgctgggcggtgaaaccgcccctg 12680249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 50720477 - 50720529
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcc 53  Q
    ||||| ||| ||||||||||||||||||| |||||||||||||||||||||||    
T  50720477 attattgattgagcccgggcgaccgcccgaggtcgccgggcggtgaaaccgcc 50720529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 13012224 - 13012189
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  13012224 attatcgatcgagcccgggcgaccgcccggggtcgc 13012189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 20129346 - 20129311
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  20129346 attatcgatcgagcccgggcgaccgcccggggtcgc 20129311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 2 - 57
Target Start/End: Original strand, 30077763 - 30077817
Alignment:
Q  2 ttatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    |||||||| ||||| ||||||||||||| ||||| |||||||||||||||||||||    
T  30077763 ttatcgattgagcctgggcgaccgcccgaggtcg-cgggcggtgaaaccgcccctg 30077817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 30109992 - 30109945
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaa 48  Q
    ||||||||||||| ||||||||||| ||||||||| ||||||||||||    
T  30109992 attatcgatcgagtccgggcgaccgtccggggtcgtcgggcggtgaaa 30109945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 47500809 - 47500774
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  47500809 attatcgatcgagcccgggcgaccgcccggggtcgc 47500774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 26448089 - 26448035
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccc 55  Q
    ||||||||||||| |||| ||| ||| ||| ||||||||||||||||||||||||    
T  26448089 attatcgatcgagtccggacgatcgcacggagtcgccgggcggtgaaaccgcccc 26448035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 29996114 - 29996167
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 54  Q
    ||||||||||||| |||| |||||| ||||| ||| ||||||||||||||||||    
T  29996114 attatcgatcgagtccggacgaccgtccgggatcgtcgggcggtgaaaccgccc 29996167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 57
Target Start/End: Complemental strand, 27363393 - 27363341
Alignment:
Q  5 tcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    ||||||||||||||||||||||||| |||||||   |||| ||||||||||||    
T  27363393 tcgatcgagcccgggcgaccgcccgaggtcgccatacggtaaaaccgcccctg 27363341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36382476 - 36382512
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgcc 37  Q
    ||||| |||||||||||||||||||||||||||||||    
T  36382476 attatggatcgagcccgggcgaccgcccggggtcgcc 36382512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 26439410 - 26439445
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgc 36  Q
    |||||||| |||||||||||||||||||||||||||    
T  26439410 attatcgaccgagcccgggcgaccgcccggggtcgc 26439445  T

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Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 34407415 - 34407450
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgc 36  Q
    |||||||| |||||||||||||||||||||||||||    
T  34407415 attatcgaccgagcccgggcgaccgcccggggtcgc 34407450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 42333907 - 42333957
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccg 51  Q
    ||||||||| |||||||| |||||||||||| |||| || |||||||||||    
T  42333907 attatcgattgagcccggacgaccgcccgggatcgctggacggtgaaaccg 42333957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 48989364 - 48989311
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 54  Q
    |||||||||||| |||||  |||||||||| |||| ||||||||||||| ||||    
T  48989364 attatcgatcgaacccggttgaccgcccggagtcgtcgggcggtgaaactgccc 48989311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25930744 - 25930708
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgcc 37  Q
    ||||| |||||||||||||||||||||| ||||||||    
T  25930744 attatagatcgagcccgggcgaccgcccagggtcgcc 25930708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 28877381 - 28877437
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    |||||||||| |||||  |||||||| |||||||  ||| |||||||||||||||||    
T  28877381 attatcgatctagcccaagcgaccgcacggggtcatcggacggtgaaaccgcccctg 28877437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 57
Target Start/End: Original strand, 37236646 - 37236678
Alignment:
Q  25 gcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    |||||||||||||||||||||||||||| ||||    
T  37236646 gcccggggtcgccgggcggtgaaaccgctcctg 37236678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 58; Significance: 2e-24; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Complemental strand, 8147387 - 8147330
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctga 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8147387 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctga 8147330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 45418619 - 45418563
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45418619 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 45418563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 44084734 - 44084789
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccct 56  Q
    ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  44084734 attatcgatcgagcccgggcgactgcccggggtcgccgggcggtgaaaccgcccct 44084789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 57
Target Start/End: Complemental strand, 34523270 - 34523220
Alignment:
Q  7 gatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  34523270 gatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgcccctg 34523220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 57
Target Start/End: Complemental strand, 26237991 - 26237937
Alignment:
Q  3 tatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    ||||||||||||||||||||||||||||||||||||||| || ||||| ||||||    
T  26237991 tatcgatcgagcccgggcgaccgcccggggtcgccgggctgtaaaaccacccctg 26237937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 2 - 56
Target Start/End: Complemental strand, 771034 - 770975
Alignment:
Q  2 ttatcgatcgagcccgggcgaccgcccgg-----ggtcgccgggcggtgaaaccgcccct 56  Q
    |||||||||||||||||||||||||||||     ||||||||||||||||||||||||||    
T  771034 ttatcgatcgagcccgggcgaccgcccgggatccggtcgccgggcggtgaaaccgcccct 770975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42440022 - 42439986
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgcc 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  42440022 attatcgatcgagcccgggcgaccgcccggggtcgcc 42439986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 6403935 - 6403970
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  6403935 attatcgatcgagcccgggcgaccgcccggggtcgc 6403970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 60
Target Start/End: Original strand, 8059464 - 8059523
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctgatc 60  Q
    ||||||||| ||||| |||||| || ||||||||| |||||||||||||||||| |||||    
T  8059464 attatcgattgagcctgggcgatcggccggggtcgtcgggcggtgaaaccgcccttgatc 8059523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 41251765 - 41251798
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtc 34  Q
    ||||||||||||||||||||||||||||||||||    
T  41251765 attatcgatcgagcccgggcgaccgcccggggtc 41251798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 2958231 - 2958267
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgcc 37  Q
    |||||||||||||||||| ||||||||||||||||||    
T  2958231 attatcgatcgagcccggacgaccgcccggggtcgcc 2958267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 32127272 - 32127308
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgcc 37  Q
    ||||| |||||||||||||||||||||||||||||||    
T  32127272 attattgatcgagcccgggcgaccgcccggggtcgcc 32127308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 26 - 57
Target Start/End: Original strand, 12756981 - 12757012
Alignment:
Q  26 cccggggtcgccgggcggtgaaaccgcccctg 57  Q
    ||||||||||||||||||||||||||||||||    
T  12756981 cccggggtcgccgggcggtgaaaccgcccctg 12757012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17445170 - 17445206
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgcc 37  Q
    |||||||||||||| |||||||||||||| |||||||    
T  17445170 attatcgatcgagctcgggcgaccgcccgaggtcgcc 17445206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35962751 - 35962715
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgcc 37  Q
    |||||||||||||||||| |||||||| |||||||||    
T  35962751 attatcgatcgagcccggacgaccgcctggggtcgcc 35962715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 57; Significance: 7e-24; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 31680403 - 31680347
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31680403 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 31680347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 17332682 - 17332739
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctga 58  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  17332682 attatcgatcgagcccgggcgaacgcccggggtcgccgggcggtgaaaccgcccctga 17332739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 12278991 - 12279047
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    ||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||    
T  12278991 attatcgatcgagtccgggcgaccgcccgggatcgccgggcggtgaaaccgcccctg 12279047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 31501847 - 31501903
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    |||||||||||||||||||| | ||||||||||||||||||||||||||||||||||    
T  31501847 attatcgatcgagcccgggcaatcgcccggggtcgccgggcggtgaaaccgcccctg 31501903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 7 - 57
Target Start/End: Original strand, 26543902 - 26543952
Alignment:
Q  7 gatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26543902 gatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgcccctg 26543952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 37254677 - 37254624
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 54  Q
    ||||||||||||||| ||||||||||| |||||||||| |||||||||||||||    
T  37254677 attatcgatcgagcctgggcgaccgcctggggtcgccgagcggtgaaaccgccc 37254624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 202675 - 202621
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccc 55  Q
    |||||||||||||||||||||||| ||  |||||| |||||||||||||||||||    
T  202675 attatcgatcgagcccgggcgaccacctagggtcgtcgggcggtgaaaccgcccc 202621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 36291407 - 36291351
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    ||||| |||||| ||||| ||||||||||| |||| |||||||||||||||||||||    
T  36291407 attattgatcgaacccggacgaccgcccggagtcggcgggcggtgaaaccgcccctg 36291351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 1776507 - 1776541
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcg 35  Q
    |||||||||||||||||||||||||||||||||||    
T  1776507 attatcgatcgagcccgggcgaccgcccggggtcg 1776541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 25 - 59
Target Start/End: Complemental strand, 15917049 - 15917015
Alignment:
Q  25 gcccggggtcgccgggcggtgaaaccgcccctgat 59  Q
    |||||||||||||||||||||||||||||||||||    
T  15917049 gcccggggtcgccgggcggtgaaaccgcccctgat 15917015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 25 - 58
Target Start/End: Original strand, 4307238 - 4307271
Alignment:
Q  25 gcccggggtcgccgggcggtgaaaccgcccctga 58  Q
    ||||||||||||||||||||||||||||||||||    
T  4307238 gcccggggtcgccgggcggtgaaaccgcccctga 4307271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 13818013 - 13817957
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    ||||||||||||||||| |||||||||||||||||||   ||||  |||||||||||    
T  13818013 attatcgatcgagcccgagcgaccgcccggggtcgccatacggtagaaccgcccctg 13817957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39434732 - 39434696
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgcc 37  Q
    |||||||||||||||||||||||||||| ||||||||    
T  39434732 attatcgatcgagcccgggcgaccgcccagggtcgcc 39434696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 26283449 - 26283484
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgc 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  26283449 attatcgatcgagcccgggcgaccgcccgaggtcgc 26283484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 10033963 - 10033907
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    |||||||||||||||||||||| || |||||||||||   ||||  |||||||||||    
T  10033963 attatcgatcgagcccgggcgatcgtccggggtcgccatacggtagaaccgcccctg 10033907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 8867862 - 8867918
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  8867862 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaactgcccctg 8867918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 7002757 - 7002703
Alignment:
Q  5 tcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctgat 59  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7002757 tcgatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgcccctgat 7002703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 59
Target Start/End: Complemental strand, 7048628 - 7048574
Alignment:
Q  5 tcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctgat 59  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  7048628 tcgatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgcccctgat 7048574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 34389187 - 34389240
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 54  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  34389187 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaatcgccc 34389240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 33685600 - 33685544
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    ||||||||||||||||| ||||| ||| |||||||||||||||||||||||||||||    
T  33685600 attatcgatcgagcccgagcgactgcctggggtcgccgggcggtgaaaccgcccctg 33685544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 43184599 - 43184655
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    ||||||||||||||||| ||||||||||||  |||||||||||||||||||||||||    
T  43184599 attatcgatcgagcccgagcgaccgcccggaatcgccgggcggtgaaaccgcccctg 43184655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 37002275 - 37002330
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccct 56  Q
    ||||||||||||| |||  |||||||||||||||||||||||||||||||||||||    
T  37002275 attatcgatcgagaccgaacgaccgcccggggtcgccgggcggtgaaaccgcccct 37002330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 8 - 57
Target Start/End: Complemental strand, 26624774 - 26624725
Alignment:
Q  8 atcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    ||||||||| |||||||||||||||| |||||||||||||||||||||||    
T  26624774 atcgagcccaggcgaccgcccggggttgccgggcggtgaaaccgcccctg 26624725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 37966614 - 37966671
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctga 58  Q
    |||||||||||||| ||| |||||||| | ||||||||||||||||||||||| ||||    
T  37966614 attatcgatcgagctcggacgaccgcctgaggtcgccgggcggtgaaaccgcctctga 37966671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5555523 - 5555487
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgcc 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  5555523 attatcgatcgagcccgggcgaccgcccggggtcgcc 5555487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8394161 - 8394125
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgcc 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  8394161 attatcgatcgagcccgggcgaccgcccggggtcgcc 8394125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 10876838 - 10876894
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    |||||||||||||||||||||||| | |||| ||||||||  ||||||| |||||||    
T  10876838 attatcgatcgagcccgggcgaccacacgggttcgccgggaagtgaaactgcccctg 10876894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 36630852 - 36630816
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgcc 37  Q
    ||||||||||||||||||||||||| |||||||||||    
T  36630852 attatcgatcgagcccgggcgaccgtccggggtcgcc 36630816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 14777238 - 14777273
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgc 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  14777238 attatcgatcgagcccgggcgaccgcccgggatcgc 14777273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 3114227 - 3114260
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtc 34  Q
    ||||||||||||||||||||||||| ||||||||    
T  3114227 attatcgatcgagcccgggcgaccgtccggggtc 3114260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 25 - 54
Target Start/End: Original strand, 38826584 - 38826613
Alignment:
Q  25 gcccggggtcgccgggcggtgaaaccgccc 54  Q
    ||||||||||||||||||||||||||||||    
T  38826584 gcccggggtcgccgggcggtgaaaccgccc 38826613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 36658203 - 36658171
Alignment:
Q  27 ccggggtcgccgggcggtgaaaccgcccctgat 59  Q
    |||||||||| ||||||||||||||||||||||    
T  36658203 ccggggtcgctgggcggtgaaaccgcccctgat 36658171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 13647053 - 13646997
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  13647053 attatcgatcgagcccgggcgaccgcccggggtcgccgggtggtgaaaccgcccctg 13646997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 28996766 - 28996710
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28996766 attatcgatcgagctcgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 28996710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 34385519 - 34385575
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    ||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||    
T  34385519 attatcgatcgagccagggcaaccgcccggggtcgccgggcggtgaaaccgcccctg 34385575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 59
Target Start/End: Original strand, 21149332 - 21149390
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctgat 59  Q
    |||||||||| |||||| ||||||||||| |||| |||||||||||||| |||||||||    
T  21149332 attatcgatcaagcccgagcgaccgcccgaggtcaccgggcggtgaaactgcccctgat 21149390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 31028495 - 31028545
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccg 51  Q
    ||||||||||||| |||||| ||||| ||||||||||||||||||||||||    
T  31028495 attatcgatcgagtccgggcaaccgctcggggtcgccgggcggtgaaaccg 31028545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 24697948 - 24698000
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcc 53  Q
    ||||||||| ||||||||||||  | |||||||||||||||||||||||||||    
T  24697948 attatcgattgagcccgggcgagtgtccggggtcgccgggcggtgaaaccgcc 24698000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 29743319 - 29743263
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    ||||||||| |||||||||| |||||||||| ||| ||| |||||||||||||||||    
T  29743319 attatcgattgagcccgggcaaccgcccgggatcgtcggacggtgaaaccgcccctg 29743263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 398653 - 398618
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  398653 attatcgatcgagcccgggcgaccgcccggggtcgc 398618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 2753386 - 2753330
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    ||||||||| |||| ||||||||||||  |||||||||| ||||||||||| |||||    
T  2753386 attatcgattgagctcgggcgaccgcctagggtcgccggacggtgaaaccgtccctg 2753330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18339142 - 18339106
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgcc 37  Q
    ||||| |||||||||||||||||||||||||||||||    
T  18339142 attattgatcgagcccgggcgaccgcccggggtcgcc 18339106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34948889 - 34948925
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgcc 37  Q
    ||||||||||||||| ||||||||||| |||||||||    
T  34948889 attatcgatcgagcctgggcgaccgcctggggtcgcc 34948925  T

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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 31867013 - 31866958
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccct 56  Q
    ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  31867013 attatcggtcgaacccgggcgaccgcccggggtcgccgggcggtgaaaccgcccct 31866958  T

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Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 35907588 - 35907535
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 54  Q
    |||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  35907588 attatcgatcaagcccgggcgaccgcccgaggtcgccgggcggtgaaaccgccc 35907535  T

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Target: chr1; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 44352614 - 44352670
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    |||||||||||||||||||||||| ||||||||||||||  ||||||||||||||||    
T  44352614 attatcgatcgagcccgggcgacctcccggggtcgccggatggtgaaaccgcccctg 44352670  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 26144291 - 26144256
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  26144291 attatcgatcgagcccgggcgaccgcccggggtcgc 26144256  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 321508 - 321561
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 54  Q
    |||||||||||||||||| ||||||||||   |||||||| |||||||||||||    
T  321508 attatcgatcgagcccggacgaccgcccgaaatcgccgggtggtgaaaccgccc 321561  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 17445349 - 17445293
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    ||||| |||| |||||||||||||||  |||||||||||||  ||||||||||||||    
T  17445349 attattgatccagcccgggcgaccgcatggggtcgccgggcaatgaaaccgcccctg 17445293  T

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Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 41972406 - 41972461
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    ||||||||||||||| || ||||||||||||||||| || ||||| |||||||||||    
T  41972406 attatcgatcgagccagg-cgaccgcccggggtcgctggacggtggaaccgcccctg 41972461  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 3829020 - 3828967
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 54  Q
    |||||||||||| |||| ||||||| ||||||| |||||| | |||||||||||    
T  3829020 attatcgatcgaacccgagcgaccgtccggggttgccgggtgatgaaaccgccc 3828967  T

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Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 57
Target Start/End: Complemental strand, 33489704 - 33489667
Alignment:
Q  20 cgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    |||||| |||||||||||||| ||||||||||||||||    
T  33489704 cgaccgtccggggtcgccgggtggtgaaaccgcccctg 33489667  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 48901236 - 48901292
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctga 58  Q
    |||||||||||| ||||| | ||||||||| || ||||||||||| ||||||||||||    
T  48901236 attatcgatcgaccccggcc-accgcccggagttgccgggcggtggaaccgcccctga 48901292  T

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Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 25 - 53
Target Start/End: Complemental strand, 10907641 - 10907613
Alignment:
Q  25 gcccggggtcgccgggcggtgaaaccgcc 53  Q
    |||||||||||||||||||||||||||||    
T  10907641 gcccggggtcgccgggcggtgaaaccgcc 10907613  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 32982187 - 32982223
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgcc 37  Q
    ||||||||||| ||||| |||||||||||||||||||    
T  32982187 attatcgatcgggcccgcgcgaccgcccggggtcgcc 32982223  T

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Target: scaffold0769 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 7 - 55
Target Start/End: Complemental strand, 1307 - 1259
Alignment:
Q  7 gatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccc 55  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||    
T  1307 gatcgagcccgggcgaccgcccggggtcgccgggcggtaaaaccgcccc 1259  T

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Target: scaffold0154 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 31516 - 31460
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 57  Q
    ||||||||||||||||||||||||| | |||||||||||||| ||||||||||||||    
T  31516 attatcgatcgagcccgggcgaccgtctggggtcgccgggcgatgaaaccgcccctg 31460  T

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Target: scaffold0012 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 7 - 44
Target Start/End: Complemental strand, 194058 - 194021
Alignment:
Q  7 gatcgagcccgggcgaccgcccggggtcgccgggcggt 44  Q
    ||||||||||||||||||||||||||||||||||||||    
T  194058 gatcgagcccgggcgaccgcccggggtcgccgggcggt 194021  T

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Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 480588 - 480623
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  480588 attatcgatcgagcccgggcgaccgcccggggtcgc 480623  T

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Target: scaffold0502 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 5266 - 5230
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgcc 37  Q
    ||||| |||||||||||||||||||||||||||||||    
T  5266 attattgatcgagcccgggcgaccgcccggggtcgcc 5230  T

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Target: scaffold2142 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 558 - 523
Alignment:
Q  1 attatcgatcgagcccgggcgaccgcccggggtcgc 36  Q
    ||||||||||||||||||||||||||||||| ||||    
T  558 attatcgatcgagcccgggcgaccgcccgggatcgc 523  T

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