View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8084_low_16 (Length: 264)

Name: NF8084_low_16
Description: NF8084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8084_low_16
NF8084_low_16
[»] chr5 (22 HSPs)
chr5 (13-200)||(31680347-31680534)
chr5 (13-197)||(37254624-37254808)
chr5 (13-200)||(12278860-12279047)
chr5 (13-200)||(17332551-17332738)
chr5 (16-181)||(10033926-10034091)
chr5 (13-181)||(13817976-13818144)
chr5 (13-200)||(31501716-31501903)
chr5 (13-166)||(33430335-33430488)
chr5 (13-181)||(39434695-39434863)
chr5 (16-181)||(39657509-39657674)
chr5 (14-178)||(1776377-1776541)
chr5 (13-162)||(16155015-16155164)
chr5 (13-181)||(36293621-36293789)
chr5 (16-150)||(16333879-16334013)
chr5 (13-179)||(26283318-26283484)
chr5 (13-178)||(19985941-19986106)
chr5 (13-161)||(43068896-43069044)
chr5 (32-181)||(3155650-3155799)
chr5 (13-201)||(36291350-36291538)
chr5 (83-166)||(28801301-28801384)
chr5 (95-203)||(202616-202724)
chr5 (88-200)||(26543841-26543952)
[»] chr8 (16 HSPs)
chr8 (13-194)||(16788025-16788206)
chr8 (13-180)||(4404008-4404175)
chr8 (13-200)||(23402088-23402275)
chr8 (13-193)||(34136825-34137005)
chr8 (13-202)||(3648794-3648983)
chr8 (13-181)||(29728386-29728554)
chr8 (16-181)||(15838285-15838449)
chr8 (13-179)||(39914516-39914681)
chr8 (13-204)||(2729196-2729387)
chr8 (13-200)||(36408531-36408718)
chr8 (26-158)||(9877242-9877374)
chr8 (13-148)||(42230971-42231104)
chr8 (54-164)||(3435285-3435397)
chr8 (95-185)||(10397122-10397212)
chr8 (87-157)||(40470567-40470637)
chr8 (13-47)||(40470475-40470509)
[»] chr2 (23 HSPs)
chr2 (13-199)||(44084603-44084789)
chr2 (13-200)||(45418563-45418750)
chr2 (14-199)||(770975-771165)
chr2 (16-181)||(42439985-42440150)
chr2 (13-177)||(41251634-41251798)
chr2 (14-200)||(8147331-8147518)
chr2 (16-174)||(18981622-18981780)
chr2 (13-181)||(31581622-31581790)
chr2 (16-181)||(32127144-32127309)
chr2 (16-181)||(35962714-35962879)
chr2 (16-197)||(8059336-8059517)
chr2 (13-181)||(17445041-17445207)
chr2 (13-179)||(6403804-6403970)
chr2 (13-162)||(12756837-12756986)
chr2 (16-177)||(16405603-16405764)
chr2 (43-181)||(2958131-2958268)
chr2 (13-161)||(26162702-26162847)
chr2 (80-180)||(26237957-26238056)
chr2 (16-155)||(2285887-2286026)
chr2 (80-156)||(4555278-4555354)
chr2 (90-171)||(7072627-7072710)
chr2 (101-160)||(34905969-34906028)
chr2 (89-202)||(34523218-34523330)
[»] chr7 (21 HSPs)
chr7 (13-197)||(34389056-34389240)
chr7 (13-200)||(33685544-33685731)
chr7 (13-199)||(37002144-37002330)
chr7 (16-181)||(5555486-5555651)
chr7 (16-177)||(3114099-3114260)
chr7 (13-181)||(36630815-36630983)
chr7 (13-202)||(26624723-26624913)
chr7 (13-181)||(8394124-8394292)
chr7 (15-179)||(14777109-14777273)
chr7 (13-200)||(43184468-43184655)
chr7 (13-171)||(35090177-35090335)
chr7 (15-200)||(8867733-8867918)
chr7 (13-161)||(40920003-40920151)
chr7 (13-200)||(7002705-7002892)
chr7 (13-200)||(7048576-7048763)
chr7 (14-157)||(38638237-38638380)
chr7 (13-162)||(36658199-36658348)
chr7 (90-181)||(26502809-26502899)
chr7 (90-181)||(26589815-26589905)
chr7 (80-121)||(10868542-10868583)
chr7 (135-166)||(10876829-10876860)
[»] chr3 (21 HSPs)
chr3 (13-197)||(45182964-45183148)
chr3 (13-205)||(11018212-11018404)
chr3 (13-193)||(27935165-27935345)
chr3 (13-201)||(6930894-6931082)
chr3 (13-199)||(33040934-33041120)
chr3 (13-179)||(22968444-22968610)
chr3 (13-181)||(34084122-34084290)
chr3 (14-179)||(6269427-6269592)
chr3 (13-197)||(6503569-6503753)
chr3 (13-181)||(19390145-19390313)
chr3 (13-179)||(39771791-39771957)
chr3 (32-202)||(19565520-19565690)
chr3 (13-166)||(40081741-40081892)
chr3 (13-199)||(45335856-45336041)
chr3 (13-197)||(35514249-35514429)
chr3 (84-158)||(5135291-5135365)
chr3 (80-203)||(5354686-5354809)
chr3 (143-202)||(6890976-6891035)
chr3 (123-181)||(22922156-22922214)
chr3 (13-61)||(22922214-22922262)
chr3 (13-47)||(5135421-5135455)
[»] chr4 (46 HSPs)
chr4 (13-199)||(30216742-30216928)
chr4 (13-202)||(43143584-43143773)
chr4 (13-201)||(3292896-3293084)
chr4 (13-181)||(25930707-25930875)
chr4 (13-200)||(6690235-6690422)
chr4 (15-200)||(50205079-50205264)
chr4 (13-179)||(20129311-20129477)
chr4 (13-197)||(48989311-48989495)
chr4 (13-181)||(36382346-36382513)
chr4 (32-179)||(42333795-42333942)
chr4 (13-179)||(13012189-13012355)
chr4 (13-166)||(17511233-17511387)
chr4 (13-179)||(47500774-47500940)
chr4 (13-179)||(26439279-26439445)
chr4 (13-179)||(34407284-34407450)
chr4 (16-166)||(40529029-40529179)
chr4 (13-179)||(43355905-43356071)
chr4 (16-177)||(29319708-29319869)
chr4 (32-200)||(10352903-10353071)
chr4 (13-163)||(44156668-44156818)
chr4 (13-200)||(28877250-28877437)
chr4 (13-197)||(29995983-29996167)
chr4 (13-198)||(26448035-26448219)
chr4 (13-125)||(6235575-6235687)
chr4 (13-156)||(35545977-35546120)
chr4 (13-200)||(30077631-30077817)
chr4 (13-145)||(1817752-1817884)
chr4 (84-191)||(30109945-30110052)
chr4 (83-166)||(48129980-48130063)
chr4 (95-202)||(27363339-27363446)
chr4 (80-197)||(45194159-45194276)
chr4 (25-102)||(13392893-13392970)
chr4 (25-102)||(13396032-13396109)
chr4 (143-202)||(49908782-49908841)
chr4 (95-196)||(20113775-20113876)
chr4 (87-155)||(6254569-6254637)
chr4 (143-200)||(5517494-5517551)
chr4 (139-202)||(7769306-7769369)
chr4 (144-200)||(6212029-6212085)
chr4 (132-200)||(13392989-13393057)
chr4 (132-200)||(13396128-13396196)
chr4 (144-198)||(17554978-17555032)
chr4 (13-47)||(30110108-30110142)
chr4 (13-47)||(48130111-48130145)
chr4 (143-201)||(50720476-50720534)
chr4 (144-200)||(12680193-12680249)
[»] chr6 (14 HSPs)
chr6 (13-200)||(28996710-28996897)
chr6 (13-180)||(18339106-18339273)
chr6 (16-181)||(34948761-34948926)
chr6 (13-179)||(398618-398784)
chr6 (16-181)||(13837820-13837985)
chr6 (13-201)||(29743262-29743450)
chr6 (13-164)||(33229336-33229487)
chr6 (95-201)||(24697899-24698005)
chr6 (84-194)||(31028435-31028545)
chr6 (95-165)||(24695502-24695572)
chr6 (144-200)||(13646997-13647053)
chr6 (144-200)||(34385519-34385575)
chr6 (102-165)||(3050094-3050157)
chr6 (103-152)||(24072576-24072625)
[»] scaffold0502 (1 HSPs)
scaffold0502 (13-180)||(5230-5397)
[»] scaffold0154 (1 HSPs)
scaffold0154 (13-200)||(31460-31647)
[»] chr1 (17 HSPs)
chr1 (14-200)||(17445293-17445479)
chr1 (13-197)||(35907535-35907719)
chr1 (16-181)||(7433444-7433609)
chr1 (13-197)||(321377-321561)
chr1 (13-197)||(3828967-3829150)
chr1 (13-179)||(26144256-26144422)
chr1 (13-165)||(42310941-42311093)
chr1 (13-181)||(32982056-32982224)
chr1 (84-201)||(41972346-41972462)
chr1 (54-202)||(33489665-33489815)
chr1 (79-181)||(23313237-23313340)
chr1 (95-161)||(35951427-35951493)
chr1 (111-200)||(48901203-48901291)
chr1 (143-199)||(31866958-31867014)
chr1 (144-200)||(44352614-44352670)
chr1 (13-47)||(33489839-33489873)
chr1 (13-47)||(41972256-41972290)
[»] scaffold0069 (1 HSPs)
scaffold0069 (13-181)||(17841-18009)
[»] scaffold0002 (1 HSPs)
scaffold0002 (13-179)||(480457-480623)
[»] scaffold0041 (1 HSPs)
scaffold0041 (13-161)||(52944-53092)
[»] scaffold2142 (1 HSPs)
scaffold2142 (13-179)||(523-689)
[»] scaffold0769 (1 HSPs)
scaffold0769 (89-198)||(1259-1367)
[»] scaffold0012 (1 HSPs)
scaffold0012 (89-185)||(194023-194118)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 31680534 - 31680347
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||    
T  31680534 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 31680435  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    | ||||||||||||| |||||||| | ||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||    
T  31680434 ttggcttttgggttgggtctaatgcggaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 31680347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 37254808 - 37254624
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||    
T  37254808 gagatgaacccgtcaataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 37254709  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgccc 197  Q
    | | ||||||||||| |||||||||||||||||||||||||||||| ||||||| ||| |||||||||  ||| |||||||||||    
T  37254708 ttgacttttgggttgggtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgccgagcggtgaaaccgccc 37254624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 12278860 - 12279047
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||| ||||||| |||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||    
T  12278860 gagatgaacctgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 12278959  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    | ||| ||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||| ||||| |||| ||||||||||||||    
T  12278960 ttggcctttgggttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgcccgggatcgccgggcggtgaaaccgcccctg 12279047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 17332551 - 17332738
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| ||||||||| |||||||||||||||||| |||||||||||| | ||| |||||| | ||||||||||||||||||||||||||||||||||    
T  17332551 gagatgaatccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcagattgcccaaatttttctttttgtaagtgtgttaa 17332650  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    | ||||||||||||| ||||||| |||||||||||||||||||||||||||||  ||||||||||||| |||| ||||||||||||||    
T  17332651 ttggcttttgggttgggtctaatatgcaaaaattatcgatcgagcccgggcgaacgcccggggtcgccgggcggtgaaaccgcccctg 17332738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 10034091 - 10033926
Alignment:
Q  16 atgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgg 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||| | ||||||||||||||||||||||||| |||||||||||    
T  10034091 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgg 10033992  T
Q  116 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||  | ||||||||||||    
T  10033991 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgatcgtccggggtcgcca 10033926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 13818144 - 13817976
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    ||||||| |||||||||| ||||||||||||| ||||||||||||||||| | ||| |||||| | ||||||||||||||||||||||||| ||||||||    
T  13818144 gagatgagcccgtcaatagtgtgctaaataaatttccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 13818045  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||    
T  13818044 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgagcgaccgcccggggtcgcca 13817976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 31501716 - 31501903
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    ||||||||| | |||||| |||||||||||||||| | |||||||||||| |  ||||||||| | ||||||||||||||||||||||||||||||||||    
T  31501716 gagatgaactcatcaatagtgtgctaaataaaatttcgagacctatttgcgtgcgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 31501815  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    | ||||||||||||| ||||||||||||||||||||||||||||||||||| |  ||||||||||||| |||| ||||||||||||||    
T  31501816 ttggcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcaatcgcccggggtcgccgggcggtgaaaccgcccctg 31501903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 13 - 166
Target Start/End: Complemental strand, 33430488 - 33430335
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||    
T  33430488 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 33430389  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 166  Q
    | ||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  33430388 ttggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgac 33430335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 39434863 - 39434695
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| | ||||||| ||||||||||||||||| ||||||||||| ||| ||| |||||| | |||||||||||||||| |||||||| ||||||||    
T  39434863 gagatgaaactgtcaatagtgtgctaaataaaattcaaagacctatttacatgtgacaattttcagattgcccaaatttttcattttgtaaatgtgttaa 39434764  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||    
T  39434763 tgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgaccgcccagggtcgcca 39434695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 39657509 - 39657674
Alignment:
Q  16 atgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgg 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||| | ||||||||||||||||||||||||| ||||||||||     
T  39657509 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatga 39657608  T
Q  116 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    |||||||||||||||||||||||||||||||||| ||||||||||  |||| | | ||||||||||    
T  39657609 gcttttgggttgagtctaatgtgcaaaaattatcaatcgagcccgaacgaccgtctggggtcgcca 39657674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 14 - 178
Target Start/End: Original strand, 1776377 - 1776541
Alignment:
Q  14 agatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaat 113  Q
    ||||||||| ||| ||| ||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||||||||||||||||||| |||||||||    
T  1776377 agatgaacctgtcgatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaat 1776476  T
Q  114 gggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcg 178  Q
    || ||||| |||||| | |||||| |||||||||||||||||||||||||||| |||||||||||    
T  1776477 ggactttttggttgactttaatgtacaaaaattatcgatcgagcccgggcgaccgcccggggtcg 1776541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 16155164 - 16155015
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| | ||||||| ||||||||||||||||||||||||||||||| | ||| |||||| | |||||| |||||||||||||| ||| ||||||||    
T  16155164 gagatgaatctgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcctaaatttttctttttataaatgtgttaa 16155065  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggg 162  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16155064 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggg 16155015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 36293621 - 36293789
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| | || |||| ||||||||||||||||||||||||||||| | | ||| |||||| | ||||||||||||||||||||||||| ||||||||    
T  36293621 gagatgaaactgtaaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 36293720  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    ||||||||||||||||||||||||| |||||||||||||||||| |||| |||| || |||||||||||    
T  36293721 tgggcttttgggttgagtctaatgtacaaaaattatcgatcgagtccggacgaccgctcggggtcgcca 36293789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 16 - 150
Target Start/End: Original strand, 16333879 - 16334013
Alignment:
Q  16 atgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgg 115  Q
    ||||| ||||||||| ||||||||||||||||||||||||||||||| | ||| |||||| | ||||||||||||||||||||||||| |||||||||||    
T  16333879 atgaatccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgg 16333978  T
Q  116 gcttttgggttgagtctaatgtgcaaaaattatcg 150  Q
    ||||||||||||| |||||||||||||||||||||    
T  16333979 gcttttgggttgaatctaatgtgcaaaaattatcg 16334013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 26283318 - 26283484
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| | ||||||| ||||| ||||||||||||||||||||||| | | ||| |||||| | ||||||||||||||||||||| ||| ||||||||    
T  26283318 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 26283417  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 179  Q
    ||  ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||    
T  26283418 tgaactttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgc 26283484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 178
Target Start/End: Complemental strand, 19986106 - 19985941
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||| ||||||| |||| ||||||||||| |||||||||||||| | ||| |||||||| ||| ||||||||||||||||||||| |||| |||    
T  19986106 gagatgaacctgtcaatagtgtgttaaataaaatttcaagacctatttgcgtgtgataatttttagattacccaaatttttctttttgtaaatgtgctaa 19986007  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcg 178  Q
    ||| |||||||||||| |||||||||||||||||||||||||||| ||| |||| ||||| |||||    
T  19986006 tggacttttgggttgaatctaatgtgcaaaaattatcgatcgagctcggacgaccgcccgaggtcg 19985941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 43069044 - 43068896
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| ||| ||||| |||||||||||||||||| |||| ||||| ||| | |||||||| | ||||||||||||||||||||||||| ||||||||    
T  43069044 gagatgaatccggcaatagtgtgctaaataaaattccgagacttatttacatgtaagaattttcagattgcccaaatttttctttttgtaaatgtgttaa 43068945  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 161  Q
    ||| ||||||||||| |||||||||| ||||||||| ||||||||||||    
T  43068944 tggacttttgggttgggtctaatgtgaaaaaattattgatcgagcccgg 43068896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 32 - 181
Target Start/End: Original strand, 3155650 - 3155799
Alignment:
Q  32 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 131  Q
    |||||||||||||||||||||| |||||||| | ||| |||||| | |||| |||||||||||||||| ||| ||||||||||| ||||| |||||||||    
T  3155650 tgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgtccaaatttttctttttataaatgtgttaatggacttttaggttgagtc 3155749  T
Q  132 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
     |||||||||||||||| ||||||||||| ||||| ||||||| ||||||    
T  3155750 gaatgtgcaaaaattattgatcgagcccgagcgaccgcccgggatcgcca 3155799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 36291538 - 36291350
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| |||| ||||||||||||  |||||||||||  | | | |||||| | ||||||||||||||||||||||||| ||||||||    
T  36291538 gagatgaacccgtcaatagtgtgttaaataaaattctgagacctatttgtgtgtaataattttgagattgcccaaatttttctttttgtaaatgtgttaa 36291439  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctgg 201  Q
    ||  ||||| ||||   ||||||||||||||||||| |||||| ||||| |||| |||||| |||| | |||| |||||||||||||||    
T  36291438 tgaacttttaggttagatctaatgtgcaaaaattattgatcgaacccggacgaccgcccggagtcggcgggcggtgaaaccgcccctgg 36291350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 28801384 - 28801301
Alignment:
Q  83 cccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 166  Q
    ||||||||||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||||| |||||||    
T  28801384 cccaaatttttctttttgtaagtgtgttaatgggcttttggtttggatctaatgtgcaaaaattatcgatcgagccagggcgac 28801301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 95 - 203
Target Start/End: Complemental strand, 202724 - 202616
Alignment:
Q  95 tttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccg 194  Q
    ||||||| ||||| ||||||||||||||||||    ||||||| || |||||||||||||||||||||||||  ||  |||||| | |||| ||||||||    
T  202724 tttttgttagtgtcttaatgggcttttgggttcgacctaatgtacacaaattatcgatcgagcccgggcgaccacctagggtcgtcgggcggtgaaaccg 202625  T
Q  195 cccctggtc 203  Q
    |||| ||||    
T  202624 cccccggtc 202616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 88 - 200
Target Start/End: Original strand, 26543841 - 26543952
Alignment:
Q  88 atttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgat 187  Q
    |||||| |||||| |||||||| ||||||| | |  |||| | ||||||||   ||||||  ||||||||||||||||| ||||||||||||| |||| |    
T  26543841 atttttttttttg-aagtgtgtaaatgggcctatatgttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcggt 26543939  T
Q  188 gaaaccgcccctg 200  Q
     ||||||||||||    
T  26543940 aaaaccgcccctg 26543952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 138; Significance: 3e-72; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 13 - 194
Target Start/End: Original strand, 16788025 - 16788206
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||| | ||||||||||||||||||||||||||||||||||    
T  16788025 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagagttttaagattgcccaaatttttctttttgtaagtgtgttaa 16788124  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccg 194  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| ||| |||||||||    
T  16788125 ttggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggttgccgggcaatgaaaccg 16788206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 4404175 - 4404008
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    ||||||||||| |||||  |||||||||||||||||| |||||||||||| | |||||||||||| ||||||||||||||||||||||||||| ||||||    
T  4404175 gagatgaacccatcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgtaagtatgttaa 4404076  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcc 180  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  4404075 ttggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcctggggtcgcc 4404008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 23402275 - 23402088
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||| ||||||| |||| ||||||||||| | |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||    
T  23402275 gagatgaaccagtcaatagtgtgttaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 23402176  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    | ||||||||||||| ||||||| |||||| ||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||    
T  23402175 ttggcttttgggttgggtctaatatgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 23402088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 193
Target Start/End: Original strand, 34136825 - 34137005
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    ||||||||||| |||||  |||||||||||||||| | |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||    
T  34136825 gagatgaacccatcaattgtgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 34136924  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaacc 193  Q
    | | |||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||| || |||||||    
T  34136925 ttgacttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgctcggggtcgccagacggtgaaacc 34137005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 3648794 - 3648983
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| |||||||||||||||||||| ||||| |||| | ||| |||||| | |||||||||| |||||||||||||| ||||||||    
T  3648794 gagatgaacccgtcaatagtgtgctaaataaaattccaaaacctacttgcgtgtgacaattttcagattgcccaaaattttctttttgtaaatgtgttaa 3648893  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctggt 202  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || || ||||||  || |  |||||||||||||    
T  3648894 tgggcttttgggttgagtctaatgtgaaaaaattatcgatcgagcccgggcgactgtcccggatcgccatacggtagaaccgcccctggt 3648983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 29728386 - 29728554
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||| | | | |||||| | ||||||||||||||||||||||||| ||||||||    
T  29728386 gagatgaacccgtcaatagtgtgctaaataaaattcgaagacctatttgcgtgtcacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 29728485  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    || |||||||||||||||||||||||||||| ||||||||||||| |||||||| | ||||||||||||    
T  29728486 tgagcttttgggttgagtctaatgtgcaaaatttatcgatcgagcacgggcgaccgtccggggtcgcca 29728554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 15838449 - 15838285
Alignment:
Q  16 atgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgg 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||| | |||||||||||||||| |||||||| |||||||||||    
T  15838449 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgaaaattttcagattgcccaaatttttc-ttttgtaaatgtgttaatgg 15838351  T
Q  116 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
     ||||| |||||||| |||||||||||||||||| |||||||||||| ||| ||||||||||||||    
T  15838350 actttttggttgagtttaatgtgcaaaaattatcaatcgagcccgggtgaccgcccggggtcgcca 15838285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 39914681 - 39914516
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| | ||||||| ||||| ||||||||||||||||||||||| | | ||| |||||| ||||||||||||||||| ||||| ||| ||||||||    
T  39914681 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacttgtgacaattttcaaattgcccaaattttt-tttttataaatgtgttaa 39914583  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 179  Q
    || |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  39914582 tgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 39914516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 204
Target Start/End: Original strand, 2729196 - 2729387
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| || |||||| ||||||||||||||||   |||||||||||| ||||||| |||| |||||||| |||  ||||||||| ||||||||||||    
T  2729196 gagatgaatccatcaatagtgtgctaaataaaattttgagacctatttgcgtatgagagttttcaaattgccaaaaaatttctttttataagtgtgttaa 2729295  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctggtca 204  Q
    ||||||||||| |||  | ||||||| ||||||||||||||||||||||||| | ||||||||||||| |||| ||||||||||||| ||||    
T  2729296 tgggcttttggattggatttaatgtgtaaaaattatcgatcgagcccgggcgtccgcccggggtcgccgggcggtgaaaccgccccttgtca 2729387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 36408718 - 36408531
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| ||| ||||| |||| ||||||||||||  ||||||||| || | | |||||||| |||||||| ||| |||||||||||||| ||||||||    
T  36408718 gagatgaatccggcaatagtgtgttaaataaaattctgagacctattagcgtgtaagaattttcaaattgccaaaaattttctttttgtaaatgtgttaa 36408619  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    ||| |||||||||||  ||||||||||||||||||||||||||||||||||||| ||||| ||||||| |||| ||||||| ||||||    
T  36408618 tggacttttgggttggatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgaggtcgccgggcggtgaaaccacccctg 36408531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 26 - 158
Target Start/End: Complemental strand, 9877374 - 9877242
Alignment:
Q  26 caataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggt 125  Q
    ||||| |||||||||||||||| | |||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||| | |||||||||    
T  9877374 caatagtgtgctaaataaaatttcgagacctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattgacttttgggt 9877275  T
Q  126 tgagtctaatgtgcaaaaattatcgatcgagcc 158  Q
    |  ||||||||||||||||||||| ||||||||    
T  9877274 taggtctaatgtgcaaaaattatcaatcgagcc 9877242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 148
Target Start/End: Complemental strand, 42231104 - 42230971
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| ||||||||| |||||||||||||||||  ||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||    
T  42231104 gagatgaatccgtcaatagtgtgctaaataaaattctgagacctatttgcatatgagaattttcaaattgcccaaatttttctttttgtaa--gtgttaa 42231007  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattat 148  Q
    ||| |||||| ||||  | |||||||||||||||||    
T  42231006 tggacttttgagttggatttaatgtgcaaaaattat 42230971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 54 - 164
Target Start/End: Complemental strand, 3435397 - 3435285
Alignment:
Q  54 cctatttgcatatgagaatttttaaatt--gcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcga 151  Q
    ||||||||| | |||||||||| | |||  ||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||    
T  3435397 cctatttgcgtttgagaattttcagattttgcccaaatttttctttttgtaagtgtgttaatgggtttttgggttgggtctaatgtgcaaaaattatcga 3435298  T
Q  152 tcgagcccgggcg 164  Q
    || ||||||||||    
T  3435297 tcaagcccgggcg 3435285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 95 - 185
Target Start/End: Original strand, 10397122 - 10397212
Alignment:
Q  95 tttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcg 185  Q
    ||||| ||| ||||||||| ||||||||||||||  |||||||| | ||||||||||| |||||||||||| ||||||| |||||| ||||    
T  10397122 tttttttaactgtgttaatcggcttttgggttgaacctaatgtgaagaaattatcgattgagcccgggcgagtgcccggagtcgccgggcg 10397212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 87 - 157
Target Start/End: Original strand, 40470567 - 40470637
Alignment:
Q  87 aatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagc 157  Q
    ||||||| ||||| ||||||||||||||| ||||||  ||| |||||||||||||||||||||||||||||    
T  40470567 aatttttttttttataagtgtgttaatggacttttgatttgggtctaatgtgcaaaaattatcgatcgagc 40470637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 40470475 - 40470509
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaatt 47  Q
    |||||||||||||||||| ||||||||||||||||    
T  40470475 gagatgaacccgtcaatagtgtgctaaataaaatt 40470509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 44084603 - 44084789
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| |||||||||||||||||  |||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||    
T  44084603 gagatgaacccgtcaatagtgtgctaaataaaattctgagacctatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 44084702  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccct 199  Q
    ||  ||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  44084703 tgaacttttggattgggtttaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccgggcggtgaaaccgcccct 44084789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 45418750 - 45418563
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| |||||||||||||||||  |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||    
T  45418750 gagatgaacccgtcaatagtgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 45418651  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    | |||||||||||||  ||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||    
T  45418650 ttggcttttgggttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 45418563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 14 - 199
Target Start/End: Complemental strand, 771165 - 770975
Alignment:
Q  14 agatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaat 113  Q
    ||||||||||||||||||||||||||||||| |||| |||||||||||| | |||||||||| | |||||||||||||||||||||||||||||||||||    
T  771165 agatgaacccgtcaataatgtgctaaataaagttccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaat 771066  T
Q  114 gggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccgg-----ggtcgccaggcgatgaaaccgcccct 199  Q
    |||||||| ||||| ||||||||||||||| |||||||||||||||||||||| ||||||     ||||||| |||| |||||||||||||    
T  771065 gggctttttggttgggtctaatgtgcaaaagttatcgatcgagcccgggcgaccgcccgggatccggtcgccgggcggtgaaaccgcccct 770975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 42440150 - 42439985
Alignment:
Q  16 atgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgg 115  Q
    ||||| ||||||||| |||||||||||||||| |||||||||||||| | ||| |||||| | ||||||||||||||||||||||||| |||||||||||    
T  42440150 atgaatccgtcaatagtgtgctaaataaaattgcaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgg 42440051  T
Q  116 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  42440050 gcttttgggtttagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcca 42439985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 177
Target Start/End: Original strand, 41251634 - 41251798
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| | ||||||| ||||||||||||||||||||||||||||| | | ||| |||||| | ||||||||||||||||||||||||| ||||||||    
T  41251634 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 41251733  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtc 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  41251734 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtc 41251798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 8147518 - 8147331
Alignment:
Q  14 agatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaa-attgcccaaatttttctttttgtaagtgtgttaa 112  Q
    ||||||||||||||||| |||| ||||||||||||| ||| |||||||| | ||||||||||| | ||||||||||||||||||||||||||||||||||    
T  8147518 agatgaacccgtcaatagtgtgttaaataaaattccgagatctatttgcgtgtgagaatttttcagattgcccaaatttttctttttgtaagtgtgttaa 8147419  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    | | |||||| |||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||    
T  8147418 ttgacttttgagttgggtctaatgtgcaaagattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 8147331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 16 - 174
Target Start/End: Complemental strand, 18981780 - 18981622
Alignment:
Q  16 atgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgg 115  Q
    ||||||||||||| | ||||||||||||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||||| ||| |||||||    
T  18981780 atgaacccgtcaacagtgtgctaaataaaattccaagacctatttgcgtgtgacaatttttaaattgcccaaatttttctttttgtaaatgttttaatgg 18981681  T
Q  116 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggg 174  Q
     ||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||    
T  18981680 acttttgggttgagtctaatgtgcaaaaattatcaatcgagcccggacgaccgcccggg 18981622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 31581622 - 31581790
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||| | ||||||||||||||||||||||||| ||||||||    
T  31581622 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 31581721  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    |||||||||||| |||||||||| |||||||| ||||| ||||||| ||||||| ||||| ||||||||    
T  31581722 tgggcttttgggatgagtctaatatgcaaaaagtatcgctcgagcctgggcgaccgcccgtggtcgcca 31581790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 32127144 - 32127309
Alignment:
Q  16 atgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgg 115  Q
    ||||||||||||||| |||||||||||||||||||||| |||||||| | ||| |||||| | |||||| |||||||||||||||||| ||||||||||     
T  32127144 atgaacccgtcaatagtgtgctaaataaaattccaagatctatttgcgtgtgacaattttcagattgcctaaatttttctttttgtaaatgtgttaatga 32127243  T
Q  116 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    |||||||||| |||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  32127244 gcttttgggtcgagtttaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcca 32127309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 35962879 - 35962714
Alignment:
Q  16 atgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgg 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||  | ||| |||||| | |||||||||| |||||||||||||| |||||||||      
T  35962879 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaaattttctttttgtaaatgtgttaataa 35962780  T
Q  116 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||||||||    
T  35962779 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcctggggtcgcca 35962714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 16 - 197
Target Start/End: Original strand, 8059336 - 8059517
Alignment:
Q  16 atgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgg 115  Q
    ||||||||||||||  |||||||||||||||||| ||||| |||||  | |||||||||| |||||| |||||||||||||||||||||||||||||| |    
T  8059336 atgaacccgtcaattgtgtgctaaataaaattccgagaccgatttgtgtgtgagaattttcaaattggccaaatttttctttttgtaagtgtgttaattg 8059435  T
Q  116 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgccc 197  Q
    ||||||||||||| ||||||||||||||||||||||| ||||| ||||||  | ||||||||| | |||| |||||||||||    
T  8059436 gcttttgggttgactctaatgtgcaaaaattatcgattgagcctgggcgatcggccggggtcgtcgggcggtgaaaccgccc 8059517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 17445041 - 17445207
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| | ||||||| ||||||||||||||||||||||||||||| | | ||| |||||| | ||||||||||||||||||||||||| ||||||||    
T  17445041 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 17445140  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    |||||||||||||||||||||  |||||||||||||||||||||| |||||||| ||||| ||||||||    
T  17445141 tgggcttttgggttgagtcta--gtgcaaaaattatcgatcgagctcgggcgaccgcccgaggtcgcca 17445207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 6403804 - 6403970
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| | ||||||| ||||| ||||||||||||||||||||||| | | ||| |||||| | ||||||||||||||||||||| ||| ||||||||    
T  6403804 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 6403903  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 179  Q
    ||  ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  6403904 tgaactttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 6403970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 12756837 - 12756986
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| |||||||||||||||||| |||| ||||||| | |||||||||| | ||||| ||||||||||||||||||||||||||||    
T  12756837 gagatgaacccgtcaatagtgtgctaaataaaattccgagacttatttgcgtgtgagaattttcagattgctcaaatttttctttttgtaagtgtgttaa 12756936  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggg 162  Q
    | ||||||||||||| |||||||| |||||||||||||||||| ||||||    
T  12756937 ttggcttttgggttgggtctaatgcgcaaaaattatcgatcgaacccggg 12756986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 177
Target Start/End: Complemental strand, 16405764 - 16405603
Alignment:
Q  16 atgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgg 115  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||| | ||| |||||| | |||| |||||||||||||||| ||| ||||||||||     
T  16405764 atgaacccgtcaatagtgtgctaaataaaattccaagacttatttgcgtgtgacaattttcagattgtccaaatttttctttttataaatgtgttaatga 16405665  T
Q  116 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtc 177  Q
    ||||||||||||||||||| ||||||||||||||||| ||||||||||||| |||| |||||    
T  16405664 gcttttgggttgagtctaacgtgcaaaaattatcgattgagcccgggcgaccgcccagggtc 16405603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 43 - 181
Target Start/End: Original strand, 2958131 - 2958268
Alignment:
Q  43 aaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaa 142  Q
    |||||||||||||||||||| | ||| |||||| | ||| ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||    
T  2958131 aaattccaagacctatttgcgtgtgacaattttcagattacccaaatttttctctttgtaaatgtgttaatgggcttttgggttgagtctaatgtgc-aa 2958229  T
Q  143 aattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    ||||||||||||||||||| |||| ||||||||||||||    
T  2958230 aattatcgatcgagcccggacgaccgcccggggtcgcca 2958268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 26162702 - 26162847
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||||||||||||||||   ||| |||||||||||  | |||||||||||| ||||||||||||||||||||||||||||||||||    
T  26162702 gagatgaacccgtcaataatgtgctaaataa---tccgagacctatttgtgtttgagaatttttagattgcccaaatttttctttttgtaagtgtgttaa 26162798  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 161  Q
    |||| ||||||||||| | ||||||| ||||||||||||  ||||||||    
T  26162799 tgggtttttgggttgaatttaatgtgtaaaaattatcgaaggagcccgg 26162847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 80 - 180
Target Start/End: Complemental strand, 26238056 - 26237957
Alignment:
Q  80 ttgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 179  Q
    |||||||||||||||||||||||||||||||||||| ||||||| |||  |||||| |||||||| ||||||||||||||||||||| ||||||||||||    
T  26238056 ttgcccaaatttttctttttgtaagtgtgttaatggacttttggtttgcatctaatttgcaaaaa-tatcgatcgagcccgggcgaccgcccggggtcgc 26237958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 16 - 155
Target Start/End: Complemental strand, 2286026 - 2285887
Alignment:
Q  16 atgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgg 115  Q
    |||||| |||||||| |||||||||||||||||||| |||||||||| | ||| |||||| | ||||| |||||||||| ||| |||| ||||||||| |    
T  2286026 atgaacacgtcaatagtgtgctaaataaaattccaaaacctatttgcgtgtgacaattttcagattgctcaaatttttcctttcgtaaatgtgttaatag 2285927  T
Q  116 gcttttgggttgagtctaatgtgcaaaaattatcgatcga 155  Q
     ||||| |||||  | ||||||||||||||||||||||||    
T  2285926 actttttggttggatttaatgtgcaaaaattatcgatcga 2285887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 156
Target Start/End: Original strand, 4555278 - 4555354
Alignment:
Q  80 ttgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgag 156  Q
    ||||||||| ||||||||||||||||||||||| | |||||||||||| || | |||||||||||||||||||||||    
T  4555278 ttgcccaaaattttctttttgtaagtgtgttaacgagcttttgggttgggtttgatgtgcaaaaattatcgatcgag 4555354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 171
Target Start/End: Original strand, 7072627 - 7072710
Alignment:
Q  90 ttttctttttgtaagtgt--gttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgccc 171  Q
    |||||||||| |||||||  ||||||||||||||||||||||| ||||||  ||||||||||||||||||||||||||| ||||    
T  7072627 ttttctttttataagtgtgtgttaatgggcttttgggttgagtttaatgtaaaaaaattatcgatcgagcccgggcgaccgccc 7072710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 101 - 160
Target Start/End: Complemental strand, 34906028 - 34905969
Alignment:
Q  101 taagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccg 160  Q
    ||||||||||||||||||||||||||  |  |||||||||||||||||||||||||||||    
T  34906028 taagtgtgttaatgggcttttgggttaggcttaatgtgcaaaaattatcgatcgagcccg 34905969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 89 - 202
Target Start/End: Complemental strand, 34523330 - 34523218
Alignment:
Q  89 tttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatg 188  Q
    ||||| |||||| |||||||| ||||||| | |  |||| | ||||||||   ||||||  ||||||||||||||||| ||||||||||||| |||| |     
T  34523330 tttttttttttg-aagtgtgtaaatgggcctatatgttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcggta 34523232  T
Q  189 aaaccgcccctggt 202  Q
    ||||||||||||||    
T  34523231 aaaccgcccctggt 34523218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 133; Significance: 3e-69; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 34389056 - 34389240
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||| |||||||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||    
T  34389056 gagatgaacccgtcgataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 34389155  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgccc 197  Q
    |  |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||| |||||    
T  34389156 ttagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaatcgccc 34389240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 33685731 - 33685544
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    ||||| |||||||||||| ||||||||||||||||   |||| ||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||    
T  33685731 gagataaacccgtcaatagtgtgctaaataaaattatgagacatatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 33685632  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||| ||||||||| ||||||||| |||| ||||||||||||||    
T  33685631 tgggcttttgggttgggtttaatgtgcaaaaattatcgatcgagcccgagcgactgcctggggtcgccgggcggtgaaaccgcccctg 33685544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 37002144 - 37002330
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||    
T  37002144 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 37002243  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccct 199  Q
    | | ||||||| ||| |||||||||||||||||||||||||||| |||  |||| ||||||||||||| |||| |||||||||||||    
T  37002244 ttgacttttggattgggtctaatgtgcaaaaattatcgatcgagaccgaacgaccgcccggggtcgccgggcggtgaaaccgcccct 37002330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 5555651 - 5555486
Alignment:
Q  16 atgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgg 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||  | ||| |||||| | ||||||||||||||||||||||||| || ||||||||    
T  5555651 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgcgttaatgg 5555552  T
Q  116 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  5555551 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcca 5555486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 3114099 - 3114260
Alignment:
Q  16 atgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgg 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||  | ||| |||||| | ||||||||||||||||||||||||| |||||||||||    
T  3114099 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgg 3114198  T
Q  116 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtc 177  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||    
T  3114199 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtc 3114260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 36630983 - 36630815
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||| | ||| |||||| | ||||||||||||||||||||||||| ||||||||    
T  36630983 gagatgaacccgtcaatagtgtgctaactaaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 36630884  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||||    
T  36630883 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgcca 36630815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 202
Target Start/End: Complemental strand, 26624913 - 26624723
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||    
T  26624913 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 26624814  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcg-atcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctggt 202  Q
    |   ||||||| ||| ||||||| |||||||||||||| ||||||||| |||||| ||||||||| ||| |||| ||||||||||||||||    
T  26624813 ttaacttttggattgggtctaatatgcaaaaattatcgaatcgagcccaggcgaccgcccggggttgccgggcggtgaaaccgcccctggt 26624723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 8394292 - 8394124
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    ||||| |||||||||||| ||||||||||||||||||||||||||||| | | ||| |||||| | |||||||||||||||| |||||||| ||||||||    
T  8394292 gagataaacccgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttccttttgtaaatgtgttaa 8394193  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8394192 tggactttttggttgagtttaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgcca 8394124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 15 - 179
Target Start/End: Original strand, 14777109 - 14777273
Alignment:
Q  15 gatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatg 114  Q
    |||||| | ||||||| ||||||||||||||||||||||||||||| | | ||| |||||| | ||||||||||||||||||||||||| ||||||||||    
T  14777109 gatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatg 14777208  T
Q  115 ggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 179  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  14777209 agcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgc 14777273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 43184468 - 43184655
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| |||||||||||||||||  |||||||||||| | |||||||||| | ||||||||||||||||||||||||||| ||||||    
T  43184468 gagatgaacccgtcaatagtgtgctaaataaaattcagagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtatgttaa 43184567  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    | |||||||||||| ||||| ||| | ||||||||||||||||||||| ||||| ||||||  ||||| |||| ||||||||||||||    
T  43184568 ttggcttttgggttaagtctgatgcgtaaaaattatcgatcgagcccgagcgaccgcccggaatcgccgggcggtgaaaccgcccctg 43184655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 35090335 - 35090177
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| ||||||||| |||||||||||||||||| |||||||||||| | |||||||||| | ||| ||||||||||||||||||||||||||||||    
T  35090335 gagatgaatccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaatttttctttttgtaagtgtgttaa 35090236  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgccc 171  Q
    | ||||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||    
T  35090235 ttggcttttgggttgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgccc 35090177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 8867733 - 8867918
Alignment:
Q  15 gatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatg 114  Q
    |||||| ||||||||| |||||||||||||||||| |||||||||||| | ||| ||||||   ||||||||||||||||||||||||| ||| |||||     
T  8867733 gatgaatccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttccgattgcccaaatttttctttttgtaaatgtattaatt 8867832  T
Q  115 ggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    ||||||||| ||| ||||||| |||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| |||||||    
T  8867833 ggcttttggattgggtctaatatgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaactgcccctg 8867918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 161
Target Start/End: Original strand, 40920003 - 40920151
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||| | |||| |||||||||||||||||||| ||||||||    
T  40920003 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaatttttctttttgtaaatgtgttaa 40920102  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 161  Q
    | |||||||||||| | ||||||||||||||||||||||||||||||||    
T  40920103 ttggcttttgggttaaatctaatgtgcaaaaattatcgatcgagcccgg 40920151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 7002892 - 7002705
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| ||||||||||||||||||  ||||||||||| | |||||||||||| |||| |||||||||| |||||||| |||||||||    
T  7002892 gagatgaacccgtcaatagtgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaatttttatttttgtatgtgtgttaa 7002793  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    | ||||||||||||| || ||||||  ||||||  ||||||||||||||||||| || |||||||||| |||| ||||||||||||||    
T  7002792 ttggcttttgggttgggtgtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgcccctg 7002705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 7048763 - 7048576
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| ||||||||||||||||||  ||||||||||| | |||||||||||| |||| |||||||||| |||||||| |||||||||    
T  7048763 gagatgaacccgtcaatagtgtgctaaataaaattccgtgacctatttgcgtgtgagaatttttagattgtccaaatttttatttttgtatgtgtgttaa 7048664  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    | ||||||||||||| || ||||||  ||||||  ||||||||||||||||||| || |||||||||| |||| ||||||||||||||    
T  7048663 ttggcttttgggttgggtgtaatgtagaaaaatcgtcgatcgagcccgggcgaccgctcggggtcgccgggcggtgaaaccgcccctg 7048576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 14 - 157
Target Start/End: Original strand, 38638237 - 38638380
Alignment:
Q  14 agatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaat 113  Q
    ||||||||||||||||| |||||||||||||||||| |||||||||||| | |||||||||| | |||||||||||||||||||||||||||||||||||    
T  38638237 agatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaat 38638336  T
Q  114 gggcttttgggttgagtctaatgtgcaaaaattatcgatcgagc 157  Q
     | |||||||||||  |||||||||||||||||||| |||||||    
T  38638337 tgacttttgggttggatctaatgtgcaaaaattatcaatcgagc 38638380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 36658348 - 36658199
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||||||| ||||||| ||| ||||||    
T  36658348 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttatttttgttagtatgttaa 36658249  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggg 162  Q
    | ||||||| ||||| ||| |||||||||||||||||||||||| |||||    
T  36658248 ttggcttttcggttgggtccaatgtgcaaaaattatcgatcgagtccggg 36658199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 181
Target Start/End: Complemental strand, 26502899 - 26502809
Alignment:
Q  90 ttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    |||| |||||||| |||||||||||||||||||||||| |  |||| ||||||||   ||||||||||||||||||||||| ||||||||||    
T  26502899 ttttttttttgta-gtgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcctggggtcgcca 26502809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 90 - 181
Target Start/End: Original strand, 26589815 - 26589905
Alignment:
Q  90 ttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    |||| |||||||| |||||||||||||||||||||||| |  |||| ||||||||   ||||||||||||||||||||||| ||||||||||    
T  26589815 ttttttttttgta-gtgtgttaatgggcttttgggttgggcttaatatgcaaaaaaattcgatcgagcccgggcgactgcctggggtcgcca 26589905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 80 - 121
Target Start/End: Original strand, 10868542 - 10868583
Alignment:
Q  80 ttgcccaaatttttctttttgtaagtgtgttaatgggctttt 121  Q
    |||||||||||||||||||||||| |||||||||||||||||    
T  10868542 ttgcccaaatttttctttttgtaaatgtgttaatgggctttt 10868583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 135 - 166
Target Start/End: Original strand, 10876829 - 10876860
Alignment:
Q  135 tgtgcaaaaattatcgatcgagcccgggcgac 166  Q
    ||||||||||||||||||||||||||||||||    
T  10876829 tgtgcaaaaattatcgatcgagcccgggcgac 10876860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 133; Significance: 3e-69; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 45183148 - 45182964
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||  | |||||||||| | ||||||||||||||||||||||||||||||||||    
T  45183148 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgtgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 45183049  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgccc 197  Q
    | ||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| |||||||||||    
T  45183048 ttggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgccc 45182964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 13 - 205
Target Start/End: Original strand, 11018212 - 11018404
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||  |||||||||||||||||  |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||    
T  11018212 gagatgaacccgtcaattgtgtgctaaataaaattctgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 11018311  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctggtcat 205  Q
    | |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |||||| | || ||||||||||| |||||||    
T  11018312 ttggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcccggagtcgccggacggtgaaaccgcccatggtcat 11018404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 13 - 193
Target Start/End: Complemental strand, 27935345 - 27935165
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| | |||||||||||||||| |||||||||| | |||||||||||| | ||||||||||||||||||||||||||||||||||    
T  27935345 gagatgaacccgtcaatagtatgctaaataaaattccgagacctattttcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 27935246  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaacc 193  Q
    || |||||||||||| || |||||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||||    
T  27935245 tgagcttttgggttgggtttaatgtgcaaaaattatcgatcgagcccgggcgactgcccagggttgccaggcggtgaaacc 27935165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 6930894 - 6931082
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    ||||||||| |||||||| |||||||||||||||||| |||||||||||| | |||||||||| | |||||| |||||||||||||||||| ||||||||    
T  6930894 gagatgaactcgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcctaaatttttctttttgtaaatgtgttaa 6930993  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctgg 201  Q
    | |||||||||||||  ||||||| ||||||||||||||||||||||||||||| | ||||||||||| |||| |||||||||||||||    
T  6930994 ttggcttttgggttggatctaatgcgcaaaaattatcgatcgagcccgggcgaccgtccggggtcgccgggcggtgaaaccgcccctgg 6931082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 33041120 - 33040934
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| | ||| |||||| ||||||  ||||||||||||||||||||||||||||    
T  33041120 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgaaaattttcaaattgttcaaatttttctttttgtaagtgtgttaa 33041021  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccct 199  Q
    |  |||||||||||| ||||||| ||||||||||||| |||||||||| ||||| ||||||||||||| |||| |||||||||||||    
T  33041020 ttagcttttgggttgggtctaatatgcaaaaattatcaatcgagcccgagcgaccgcccggggtcgccgggcggtgaaaccgcccct 33040934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 22968444 - 22968610
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| | ||||||| |||||||||||||||| |||||||||||| | | ||| |||||||| ||||||||||||||||||||||||| ||||||||    
T  22968444 gagatgaaactgtcaatagtgtgctaaataaaatttcaagacctatttacgtgtgacaatttttagattgcccaaatttttctttttgtaaatgtgttaa 22968543  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 179  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||| |||| ||||||||||||    
T  22968544 tgggcttttgggttaagtctaatgtgcaaaaattatcgatcgagcccggacgaccgcccggggtcgc 22968610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 34084122 - 34084290
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    ||||||||||| |||||| ||||||||||||||||||||||||||||||| | ||| |||||| | ||||||||||||||||||||||||| ||||||||    
T  34084122 gagatgaacccatcaatagtgtgctaaataaaattccaagacctatttgcgtgtgataattttcatattgcccaaatttttctttttgtaaatgtgttaa 34084221  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    ||| ||||| |||||| | ||||||||||||||||||||||||| ||||||||| ||||||||||||||    
T  34084222 tggactttttggttgaatttaatgtgcaaaaattatcgatcgagtccgggcgaccgcccggggtcgcca 34084290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 6269427 - 6269592
Alignment:
Q  14 agatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaat 113  Q
    ||||||| | ||||||| ||||||||||||||||||||||||||||| | | ||| |||||| | ||||||||||||||||||||||||| |||||||||    
T  6269427 agatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaat 6269526  T
Q  114 gggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 179  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||| |||| ||||||| ||||    
T  6269527 gggcttttgggttgagtctaatgtgcaaaaattatcgatcgagtccggacgaccgcccgggatcgc 6269592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 6503569 - 6503753
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    ||||||||||| |||||  |||||||||||||| ||| |||||||||||| | |||||||||| | |||||  ||||||||||||||||||||||| |||    
T  6503569 gagatgaacccatcaattgtgtgctaaataaaaatccgagacctatttgcctgtgagaattttcagattgcttaaatttttctttttgtaagtgtgctaa 6503668  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgccc 197  Q
    | ||||||||||||||||||||| ||||||||| |||||||||||||||||||| ||||||||||||| | || |||||||||||    
T  6503669 ttggcttttgggttgagtctaatttgcaaaaataatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaaaccgccc 6503753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 19390313 - 19390145
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| | ||||||| ||||||||||||||||||||||||||||| | | ||| |||||| | ||||||||||||||||||||||||| ||||||||    
T  19390313 gagatgaaactgtcaatagtgtgctaaataaaattccaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 19390214  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    | | ||||| ||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||||||    
T  19390213 tagacttttaggttgagtctaatgtgcaaaaattatcgatcgaacccggacgaccgcccggggtcgcca 19390145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 39771957 - 39771791
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| | ||||||| ||||  |||||||||| |||||||||||| | | ||| |||||| | ||||||||||||||||||||| ||| ||||||||    
T  39771957 gagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 39771858  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 179  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  39771857 tgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgc 39771791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 32 - 202
Target Start/End: Original strand, 19565520 - 19565690
Alignment:
Q  32 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 131  Q
    |||||||||||||||||| |||||||||||| | | |||||||| | |||| |||||||||||||||||||| |||||||||||  |||| ||||| |||    
T  19565520 tgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgtccaaatttttctttttgtaaatgtgttaatggattttttggttgggtc 19565619  T
Q  132 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctggt 202  Q
    ||||||||||||||||||||| || |||||||||| ||||||| ||||| |||| ||||||||||||||||    
T  19565620 taatgtgcaaaaattatcgattgaacccgggcgaccgcccgggatcgccgggcggtgaaaccgcccctggt 19565690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 40081741 - 40081892
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| ||||||||| ||||| |||||| |||||||| | ||| |||||| ||||||||||||||||||||||||||| ||||||||    
T  40081741 gagatgaacccgtcaatagtgtgctaaaaaaaat-ccaagatctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaa 40081839  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 166  Q
    || |||||| ||||||||||||||| ||||||||||||||||||||||||||||    
T  40081840 tgagctttt-ggttgagtctaatgttcaaaaattatcgatcgagcccgggcgac 40081892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 13 - 199
Target Start/End: Complemental strand, 45336041 - 45335856
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| ||| || || ||||||||||||||||||||||||||||||| | | |||||||| | |||||||| |||||||||||||||| ||||||||    
T  45336041 gagatgaatccggcactagtgtgctaaataaaattccaagacctatttgcgtgtaagaattttcagattgcccagatttttctttttgtaaatgtgttaa 45335942  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccct 199  Q
    | | ||||| ||||| |||||||||| ||||||||||||| ||| ||||||||| ||||| ||||||| |||| |||||||||||||    
T  45335941 t-gactttttggttgggtctaatgtgtaaaaattatcgattgagtccgggcgaccgcccgaggtcgccgggcggtgaaaccgcccct 45335856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 35514429 - 35514249
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| ||||| |||||||||||| ||||||||||||   |||||||||| | |||| ||||||||||||||||    |||||||||    
T  35514429 gagatgaacccgtcaatagtgtgcaaaataaaattcctagacctatttgcgagtgagaattttcatattgtccaaatttttcttttt----gtgtgttaa 35514334  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgccc 197  Q
    ||| |||||||||||  |||| | ||| ||||||||||||||||||||| |||| | ||||||||||| |||| |||||| ||||    
T  35514333 tggacttttgggttggatctagtatgcgaaaattatcgatcgagcccggacgaccgtccggggtcgccgggcggtgaaactgccc 35514249  T

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Target: chr3; HSP #16
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 5135365 - 5135291
Alignment:
Q  84 ccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcc 158  Q
    ||||||||||||||||||||||||||||||| |||||| ||||| ||||||||| ||||||| ||||||||||||    
T  5135365 ccaaatttttctttttgtaagtgtgttaatgagcttttaggttgggtctaatgtacaaaaataatcgatcgagcc 5135291  T

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Target: chr3; HSP #17
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 80 - 203
Target Start/End: Complemental strand, 5354809 - 5354686
Alignment:
Q  80 ttgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 179  Q
    |||||||| ||||| |||||  |||||||| ||||||| | | |||||   ||||||||  |||||||  ||||||||||||||||| ||||||||||||    
T  5354809 ttgcccaatttttttttttttgaagtgtgtaaatgggcctataggttggacctaatgtgagaaaattaaggatcgagcccgggcgaccgcccggggtcgc 5354710  T
Q  180 caggcgatgaaaccgcccctggtc 203  Q
    | |||| |||||| ||||| ||||    
T  5354709 cgggcggtgaaactgcccccggtc 5354686  T

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Target: chr3; HSP #18
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 143 - 202
Target Start/End: Complemental strand, 6891035 - 6890976
Alignment:
Q  143 aattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctggt 202  Q
    |||||||||||||||||||||||| |||||| |||||| |||| ||||||||||||||||    
T  6891035 aattatcgatcgagcccgggcgaccgcccggtgtcgccgggcggtgaaaccgcccctggt 6890976  T

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Target: chr3; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 123 - 181
Target Start/End: Complemental strand, 22922214 - 22922156
Alignment:
Q  123 ggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    |||||||| |||||||||||||| |||||||||||||| ||||| ||||||| ||||||    
T  22922214 ggttgagtttaatgtgcaaaaatgatcgatcgagcccgagcgaccgcccgggatcgcca 22922156  T

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Target: chr3; HSP #20
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 13 - 61
Target Start/End: Complemental strand, 22922262 - 22922214
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttg 61  Q
    |||||||||||||||||| |||| ||||||||||||||||| |||||||    
T  22922262 gagatgaacccgtcaatagtgtgttaaataaaattccaagatctatttg 22922214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 5135455 - 5135421
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaatt 47  Q
    |||||||||||||||||| ||||||||||||||||    
T  5135455 gagatgaacccgtcaatagtgtgctaaataaaatt 5135421  T

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Target: chr4 (Bit Score: 131; Significance: 5e-68; HSPs: 46)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 13 - 199
Target Start/End: Original strand, 30216742 - 30216928
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| |||||||||||||||||| ||| |||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||    
T  30216742 gagatgaacccgtcaatagtgtgctaaataaaattccgagatctatttgcatgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 30216841  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccct 199  Q
    |  |||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| | || |||| ||||||||    
T  30216842 ttagcttttgggttgggtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccggacggtgaatccgcccct 30216928  T

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Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 13 - 202
Target Start/End: Original strand, 43143584 - 43143773
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    ||||||||||| |||||  |||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||    
T  43143584 gagatgaacccatcaattgtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 43143683  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctggt 202  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | || ||||||||||| ||||    
T  43143684 ttggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgtcggacggtgaaaccgcccatggt 43143773  T

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Target: chr4; HSP #3
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 13 - 201
Target Start/End: Original strand, 3292896 - 3293084
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    ||||||||| |||||||| |||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||    
T  3292896 gagatgaactcgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 3292995  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctgg 201  Q
    | ||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||||||| |  |||| |||||||||||||||    
T  3292996 ttggcttttgggttgggtctaatgggcaaaaattatcgatcgagcccgggcgaccgcccggggtcactgggcggtgaaaccgcccctgg 3293084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 25930875 - 25930707
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||||||||||||||||||| ||||||||    
T  25930875 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaa 25930776  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    |||||||||||||||||| ||||||||||||||||| ||||||||||||||||| |||| |||||||||    
T  25930775 tgggcttttgggttgagtttaatgtgcaaaaattatagatcgagcccgggcgaccgcccagggtcgcca 25930707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 6690235 - 6690422
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||| ||||||||||||| |||||||||||||||| | |||||||||||| | |||||||||| |  |||||||||||||||||||||||||||||||||    
T  6690235 gagacgaacccgtcaatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaattttcagtttgcccaaatttttctttttgtaagtgtgttaa 6690334  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    | ||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||    
T  6690335 ttggcttttgggttgggtctaatgcgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 6690422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 15 - 200
Target Start/End: Original strand, 50205079 - 50205264
Alignment:
Q  15 gatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatg 114  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||| | |||||||||| | |||| |||| |||||||||||||||||||||||||     
T  50205079 gatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgagaattttcagattgtccaattttttctttttgtaagtgtgttaatt 50205178  T
Q  115 ggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    |||||||||||||  |||||||||||||||||||||||||||| |||||||| ||||||| ||||| | || ||||||||||||||    
T  50205179 ggcttttgggttggatctaatgtgcaaaaattatcgatcgagctcgggcgaccgcccgggatcgccggacggtgaaaccgcccctg 50205264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 20129477 - 20129311
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| | ||||||| ||||| ||||||||||| ||||||||||| | | ||| |||||| | ||||||||||||||||||||||||| ||||||||    
T  20129477 gagatgaaactgtcaatagtgtgccaaataaaattctaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 20129378  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 179  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  20129377 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 20129311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 48989495 - 48989311
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||    
T  48989495 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtatgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 48989396  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgccc 197  Q
    ||| |||||| |||| || |||||||||||||||||||||||| |||||  ||| |||||| |||| | |||| |||||| ||||    
T  48989395 tggacttttgagttgggtttaatgtgcaaaaattatcgatcgaacccggttgaccgcccggagtcgtcgggcggtgaaactgccc 48989311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 36382346 - 36382513
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||| | |||| ||||||||||||||| |||| ||||||||    
T  36382346 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgtccaaatttttctttt-gtaaatgtgttaa 36382444  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    ||| ||||| |||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  36382445 tggactttttggttgagtttaatgtgcaaaaattatggatcgagcccgggcgaccgcccggggtcgcca 36382513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 32 - 179
Target Start/End: Original strand, 42333795 - 42333942
Alignment:
Q  32 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 131  Q
    |||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  42333795 tgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaattggcttttgggttgagtc 42333894  T
Q  132 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 179  Q
    ||||||||||||||||||||| |||||||| |||| ||||||| ||||    
T  42333895 taatgtgcaaaaattatcgattgagcccggacgaccgcccgggatcgc 42333942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 13012355 - 13012189
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| | ||||||| ||||| ||||||||||||||||||||||| | | ||| |||||| ||||||||||||||||||||||| ||| ||||||||    
T  13012355 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaa 13012256  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 179  Q
    || |||||| |||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  13012255 tgagctttttggttgaatctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 13012189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 166
Target Start/End: Original strand, 17511233 - 17511387
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaatt-ccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgtta 111  Q
    ||||||||||  ||||||||||||||||||||||| ||||||||||||||| | | | |||||| ||||||||||||||||||||||||||| |||||||    
T  17511233 gagatgaaccgatcaataatgtgctaaataaaatttccaagacctatttgcgtgtaacaattttcaaattgcccaaatttttctttttgtaaatgtgtta 17511332  T
Q  112 atgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 166  Q
    ||||||||||||||||||||||||||||||||||||||||||||| | |||||||    
T  17511333 atgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagtctgggcgac 17511387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 47500940 - 47500774
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| | ||||||| ||||| ||||||||||||||||||||||| | | ||| |||||| ||||||||||||||||||||||  ||| ||||||||    
T  47500940 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttcttttcataaatgtgttaa 47500841  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 179  Q
    || |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  47500840 tgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 47500774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 26439279 - 26439445
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| | ||||||| ||||  |||||||||| |||||||||||| | | ||| |||||| | ||||||||||||||||||||| ||| ||||||||    
T  26439279 gagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 26439378  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 179  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  26439379 tgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgc 26439445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 34407284 - 34407450
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| | ||||||| ||||  |||||||||| |||||||||||| | | ||| |||||| | ||||||||||||||||||||| ||| ||||||||    
T  34407284 gagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 34407383  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 179  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  34407384 tgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgaccgcccggggtcgc 34407450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 40529179 - 40529029
Alignment:
Q  16 atgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgg 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||||| |||||| |||||||||||||||||||| ||||||||||     
T  40529179 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcatgtgacaattttcaaattgtccaaatttttctttttgtaaatgtgttaatga 40529080  T
Q  116 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 166  Q
    | |||| |||||||| ||||||||||||||||||||||||| |||| ||||    
T  40529079 gtttttaggttgagtttaatgtgcaaaaattatcgatcgagtccggacgac 40529029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 43356071 - 43355905
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| | ||||||| ||||  |||||||||| |||||||||||| | | ||| |||||| | ||||||||||||||||||||| ||| ||||||||    
T  43356071 gagatgaaactgtcaatagtgtgtcaaataaaatttcaagacctatttacgtgtgacaattttcagattgcccaaatttttctttttataaatgtgttaa 43355972  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 179  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||    
T  43355971 tgggcttttgggttgagtctaatgtgcaaaaattatcgaccgagcccgggcgactgcctggggtcgc 43355905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 177
Target Start/End: Original strand, 29319708 - 29319869
Alignment:
Q  16 atgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgg 115  Q
    ||||||||||||||| ||||||||||||||||||||||| ||||||  | ||| |||||| | ||||| ||||||||||||||||||| |||||||||||    
T  29319708 atgaacccgtcaatagtgtgctaaataaaattccaagacttatttgtgtgtgacaattttcagattgctcaaatttttctttttgtaaatgtgttaatgg 29319807  T
Q  116 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtc 177  Q
    | ||||||||||||||||||||||||||||||||||||||||| || |||| ||| ||||||    
T  29319808 gattttgggttgagtctaatgtgcaaaaattatcgatcgagcctggacgaccgccaggggtc 29319869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 32 - 200
Target Start/End: Original strand, 10352903 - 10353071
Alignment:
Q  32 tgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtc 131  Q
    |||||||||||||||||| |||||||||||| | | |||||||| | |||||||||||||||| |||||||| ||||||||||| ||||| ||||| |||    
T  10352903 tgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaatttttccttttgtaaatgtgttaatggactttttggttgggtc 10353002  T
Q  132 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    ||||||||||||||||||||| ||||||||||||| ||| ||||||||| | || ||||||||||||||    
T  10353003 taatgtgcaaaaattatcgattgagcccgggcgaccgccaggggtcgccggacggtgaaaccgcccctg 10353071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 13 - 163
Target Start/End: Complemental strand, 44156818 - 44156668
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| |  ||||||||| | |||| ||||| |||||||||||||||||||||||    
T  44156818 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgagagaattttcagattgtccaaaattttctttttgtaagtgtgttaa 44156719  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggc 163  Q
    | ||||||||||||| |||||||||||||||||||||| | ||||||||||    
T  44156718 ttggcttttgggttgggtctaatgtgcaaaaattatcggttgagcccgggc 44156668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 28877250 - 28877437
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    ||||||||||| |||||| |||||||||||||||||| |||||||||||| | |||||||||||| ||| ||||||||||||||||| |||| |||||||    
T  28877250 gagatgaacccatcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaatttttagatttcccaaatttttctttttataagcgtgttaa 28877349  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    |  |||||| |||||| |||||||||||||||||||||||| |||||  ||||| || |||||||  | | || ||||||||||||||    
T  28877350 ttagcttttaggttgaatctaatgtgcaaaaattatcgatctagcccaagcgaccgcacggggtcatcggacggtgaaaccgcccctg 28877437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 29995983 - 29996167
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| ||||||||| |||||| ||||||||||| ||| |||||||| |   |||||||| | |||||||||||||||||||| |||| ||||||||    
T  29995983 gagatgaatccgtcaatagtgtgcttaataaaattccgagaactatttgcgtgcaagaattttcagattgcccaaatttttcttttcgtaaatgtgttaa 29996082  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgccc 197  Q
    ||| ||||| ||||||||||||||| |||||||||||||||||| |||| |||| | ||||| ||| | |||| |||||||||||    
T  29996083 tggactttttggttgagtctaatgtacaaaaattatcgatcgagtccggacgaccgtccgggatcgtcgggcggtgaaaccgccc 29996167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 13 - 198
Target Start/End: Complemental strand, 26448219 - 26448035
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    ||||| || ||| ||||| |||||||||||||||||| | |||||||||  |||||||||||| | ||||||||||||||| ||||||||||||||||||    
T  26448219 gagataaatccgccaatagtgtgctaaataaaattccgaaacctatttgtgtatgagaattttcagattgcccaaattttt-tttttgtaagtgtgttaa 26448121  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccc 198  Q
    ||| ||||||||||   | ||||||||||||||||||||||||| |||| |||  || ||| |||||| |||| ||||||||||||    
T  26448120 tggacttttgggttagatttaatgtgcaaaaattatcgatcgagtccggacgatcgcacggagtcgccgggcggtgaaaccgcccc 26448035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 13 - 125
Target Start/End: Complemental strand, 6235687 - 6235575
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||| ||||||||||||||||||||||||||| ||||||||    
T  6235687 gagatgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcaaattgcccaaatttttctttttgtaaatgtgttaa 6235588  T
Q  113 tgggcttttgggt 125  Q
    ||| |||||||||    
T  6235587 tggacttttgggt 6235575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 13 - 156
Target Start/End: Complemental strand, 35546120 - 35545977
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    ||||||||||| |||||| |||||||||||||||||  ||||| |||||| | |||||||||| | |||||||||| |||||||||||||||||||||||    
T  35546120 gagatgaacccatcaatagtgtgctaaataaaattcagagacccatttgcgtgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaa 35546021  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgag 156  Q
    | ||||||||||||| |||| ||| ||||||||| |||||||||    
T  35546020 ttggcttttgggttgggtctgatgcgcaaaaattgtcgatcgag 35545977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 200
Target Start/End: Original strand, 30077631 - 30077817
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| ||| || || |||||||||||||||| |||||||||||||  | | | |||||| | |||| |||||||||||||||||||| ||||||||    
T  30077631 gagatgaatccggcactagtgtgctaaataaaatttcaagacctatttgtgtgtaaaaattttcagattgtccaaatttttctttttgtaaatgtgttaa 30077730  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    ||  ||||| ||||| ||||||||||||||| |||||||| ||||| ||||||| ||||| ||||| | |||| ||||||||||||||    
T  30077731 tgaactttttggttgggtctaatgtgcaaaatttatcgattgagcctgggcgaccgcccgaggtcg-cgggcggtgaaaccgcccctg 30077817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 13 - 145
Target Start/End: Complemental strand, 1817884 - 1817752
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| ||| ||||| |||| ||||||||||||| |||||||||||| | | |||||||||| ||||||||||||||||||||| ||| ||| ||||    
T  1817884 gagatgaatccgacaatagtgtgttaaataaaattccgagacctatttgcgtgtaagaatttttagattgcccaaatttttctttttataaatgtattaa 1817785  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaat 145  Q
    ||| ||||||| |||  ||||||||||||||||    
T  1817784 tggacttttggattggatctaatgtgcaaaaat 1817752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 84 - 191
Target Start/End: Complemental strand, 30110052 - 30109945
Alignment:
Q  84 ccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccagg 183  Q
    |||||||||||||||||||||||||||||||| |||| || ||| |||||||||||||||||||||||||||| ||||||||| | ||||||||| | ||    
T  30110052 ccaaatttttctttttgtaagtgtgttaatggtctttgggtttgggtctaatgtgcaaaaattatcgatcgagtccgggcgaccgtccggggtcgtcggg 30109953  T
Q  184 cgatgaaa 191  Q
    || |||||    
T  30109952 cggtgaaa 30109945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 83 - 166
Target Start/End: Complemental strand, 48130063 - 48129980
Alignment:
Q  83 cccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgac 166  Q
    |||||||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||||||||||||| ||||    
T  48130063 cccaaatttttctttttgtaagtgtgttaatgagcttttgggttgggtctaatatgcaaaaattatcgatcgagcccggtcgac 48129980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 202
Target Start/End: Complemental strand, 27363446 - 27363339
Alignment:
Q  95 tttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccg 194  Q
    ||||||||||||||||||||||||||||||||| | ||||| ||||||||   ||||||||||||||||||| ||||| ||||||||  || | ||||||    
T  27363446 tttttgtaagtgtgttaatgggcttttgggttgggcctaatatgcaaaaaaattcgatcgagcccgggcgaccgcccgaggtcgccatacggtaaaaccg 27363347  T
Q  195 cccctggt 202  Q
    ||||||||    
T  27363346 cccctggt 27363339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 80 - 197
Target Start/End: Complemental strand, 45194276 - 45194159
Alignment:
Q  80 ttgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 179  Q
    ||||||||  |||| ||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||| |||||| |  ||| |||||||     
T  45194276 ttgcccaatattttttttttgtaagtgtgttaatggacttttgggttgagtttaatgtgcaaaaattattgatcgagtccgggcaatcgcctggggtcgt 45194177  T
Q  180 caggcgatgaaaccgccc 197  Q
    | |||| |||||| ||||    
T  45194176 cgggcggtgaaactgccc 45194159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 13392893 - 13392970
Alignment:
Q  25 tcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgta 102  Q
    |||||| |||||||||||||||| | |||||||||||| | |||||||||||| ||||||||||||||||||||||||    
T  13392893 tcaatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgta 13392970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 13396032 - 13396109
Alignment:
Q  25 tcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgta 102  Q
    |||||| |||||||||||||||| | |||||||||||| | |||||||||||| ||||||||||||||||||||||||    
T  13396032 tcaatagtgtgctaaataaaatttcgagacctatttgcgtgtgagaatttttagattgcccaaatttttctttttgta 13396109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 49908782 - 49908841
Alignment:
Q  143 aattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctggt 202  Q
    |||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||    
T  49908782 aattatcgatcgagcccgggcgaccgcccggggtcgccgggcggtgaaaccgcccctggt 49908841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 196
Target Start/End: Complemental strand, 20113876 - 20113775
Alignment:
Q  95 tttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccg 194  Q
    ||||| ||||||||||||| ||||||||||||||  |||||||  | ||||||||||| |||  ||||||| || |||||||||||||||| || |||||    
T  20113876 tttttttaagtgtgttaatcggcttttgggttgaacctaatgtaaagaaattatcgattgagttcgggcgagtgtccggggtcgccaggcggtggaaccg 20113777  T
Q  195 cc 196  Q
    ||    
T  20113776 cc 20113775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 155
Target Start/End: Complemental strand, 6254637 - 6254569
Alignment:
Q  87 aatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcga 155  Q
    ||||||| |||||| |||||||||||| | ||||||||||| || ||||||||||||||||||||||||    
T  6254637 aatttttttttttgcaagtgtgttaattgtcttttgggttgggtttaatgtgcaaaaattatcgatcga 6254569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 143 - 200
Target Start/End: Original strand, 5517494 - 5517551
Alignment:
Q  143 aattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    ||||||||||||||||| |||||| ||||||||||||| |||| ||||||||||||||    
T  5517494 aattatcgatcgagcccaggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 5517551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 139 - 202
Target Start/End: Complemental strand, 7769369 - 7769306
Alignment:
Q  139 caaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctggt 202  Q
    |||||||||||||||||||||||||||| ||| ||||||||| | || ||||||||||| ||||    
T  7769369 caaaaattatcgatcgagcccgggcgaccgcctggggtcgccggacggtgaaaccgcccatggt 7769306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 6212029 - 6212085
Alignment:
Q  144 attatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    |||||||||||||| |||||||| ||||| ||||||| | || ||||||||||||||    
T  6212029 attatcgatcgagctcgggcgaccgcccgaggtcgccggacggtgaaaccgcccctg 6212085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 13392989 - 13393057
Alignment:
Q  132 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    |||| ||||||| | |||||| ||||||||||||| | ||||||||||  |||| ||||||||||||||    
T  13392989 taatatgcaaaagtcatcgattgagcccgggcgaccgtccggggtcgctgggcggtgaaaccgcccctg 13393057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 13396128 - 13396196
Alignment:
Q  132 taatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    |||| ||||||| | |||||| ||||||||||||| | ||||||||||  |||| ||||||||||||||    
T  13396128 taatatgcaaaagtcatcgattgagcccgggcgaccgtccggggtcgctgggcggtgaaaccgcccctg 13396196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 198
Target Start/End: Complemental strand, 17555032 - 17554978
Alignment:
Q  144 attatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccc 198  Q
    |||||||||||||||||||||||  |||||||||| | | || ||||||||||||    
T  17555032 attatcgatcgagcccgggcgaccacccggggtcgtcggacggtgaaaccgcccc 17554978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 30110142 - 30110108
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaatt 47  Q
    |||||||||||||||||| ||||||||||||||||    
T  30110142 gagatgaacccgtcaatagtgtgctaaataaaatt 30110108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 48130145 - 48130111
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaatt 47  Q
    |||||||||||||||||| ||||||||||||||||    
T  48130145 gagatgaacccgtcaatagtgtgctaaataaaatt 48130111  T

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Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 143 - 201
Target Start/End: Original strand, 50720476 - 50720534
Alignment:
Q  143 aattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctgg 201  Q
    |||||| ||| ||||||||||||| ||||| ||||||| |||| |||||||||| ||||    
T  50720476 aattattgattgagcccgggcgaccgcccgaggtcgccgggcggtgaaaccgcctctgg 50720534  T

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Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 12680193 - 12680249
Alignment:
Q  144 attatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    |||||||||||||||||||| || ||| ||||| ||  |||| ||||||||||||||    
T  12680193 attatcgatcgagcccgggccaccgcctggggttgctgggcggtgaaaccgcccctg 12680249  T

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Target: chr6 (Bit Score: 128; Significance: 3e-66; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 28996897 - 28996710
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||| | |||||||||| | ||||||||||||||||||||||||||||||||||    
T  28996897 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaa 28996798  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    | | ||||| ||||| |||||||| |||||||||||||||||||| |||||||| ||||||||||||| |||| ||||||||||||||    
T  28996797 ttgacttttaggttgggtctaatgcgcaaaaattatcgatcgagctcgggcgaccgcccggggtcgccgggcggtgaaaccgcccctg 28996710  T

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Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 18339273 - 18339106
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||| | |||||||||| |||||||||||||||||||||||    
T  18339273 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaa 18339174  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcc 180  Q
    | ||||||| | ||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  18339173 ttggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 18339106  T

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Target: chr6; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 16 - 181
Target Start/End: Original strand, 34948761 - 34948926
Alignment:
Q  16 atgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgg 115  Q
    ||||||||||||||| |||||||||||||||| ||||| |||||||  | ||| |||||| | ||||||||||||||||||||||||| |||||||||||    
T  34948761 atgaacccgtcaatagtgtgctaaataaaatttcaagatctatttgtgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaatgg 34948860  T
Q  116 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||| ||||||||||    
T  34948861 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcctgggcgaccgcctggggtcgcca 34948926  T

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Target: chr6; HSP #4
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 398784 - 398618
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| | ||||||| ||||| ||||||||||||||||||||||| | | ||| |||||| ||||||||||||||||||||||| ||| ||||||||    
T  398784 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaa 398685  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 179  Q
    || |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  398684 tgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 398618  T

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Target: chr6; HSP #5
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 13837985 - 13837820
Alignment:
Q  16 atgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgg 115  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||| | ||| |||||| | ||||||||||||||||||||||||| |||||| |||     
T  13837985 atgaacccgtcaatagtgtgctaaataaaattccaagacctatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttgatgt 13837886  T
Q  116 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    |||||||||||||||||||||| ||||||||||||||||| |||| ||||  ||||||||||||||    
T  13837885 gcttttgggttgagtctaatgtacaaaaattatcgatcgaacccgagcgatcgcccggggtcgcca 13837820  T

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Target: chr6; HSP #6
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 13 - 201
Target Start/End: Complemental strand, 29743450 - 29743262
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| ||| || || |||||||||||||||||| |||||||||||| | | |||||||| | ||||||||||||||||||| ||||| ||||||||    
T  29743450 gagatgaatccggcactagtgtgctaaataaaattccgagacctatttgcgtgtaagaattttcagattgcccaaatttttctttctgtaaatgtgttaa 29743351  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctgg 201  Q
    ||  ||||| ||||| |||||||||||||||||||||||| |||||||||| || ||||||| ||| | | || |||||||||||||||    
T  29743350 tgaactttttggttgggtctaatgtgcaaaaattatcgattgagcccgggcaaccgcccgggatcgtcggacggtgaaaccgcccctgg 29743262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 13 - 164
Target Start/End: Original strand, 33229336 - 33229487
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| ||| ||||| ||||||||||||||| || |||| ||||| | | | |||||||| | |||||||||||||||||||||| || ||||||||    
T  33229336 gagatgaatccggcaatagtgtgctaaataaaatcccgagacttatttacgtgtaagaattttcagattgcccaaatttttctttttggaaatgtgttaa 33229435  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcg 164  Q
    ||| ||||||||||| ||||||||| ||||||| ||||||||||||||||||    
T  33229436 tggacttttgggttgggtctaatgtacaaaaatgatcgatcgagcccgggcg 33229487  T

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Target: chr6; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 95 - 201
Target Start/End: Original strand, 24697899 - 24698005
Alignment:
Q  95 tttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccg 194  Q
    ||||||||||||||||||||||||||||||||| | |||||||| ||||||||||||| |||||||||||| || ||||||||||| |||| ||||||||    
T  24697899 tttttgtaagtgtgttaatgggcttttgggttgggcctaatgtgaaaaaattatcgattgagcccgggcgagtgtccggggtcgccgggcggtgaaaccg 24697998  T
Q  195 cccctgg 201  Q
    || ||||    
T  24697999 ccactgg 24698005  T

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Target: chr6; HSP #9
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 84 - 194
Target Start/End: Original strand, 31028435 - 31028545
Alignment:
Q  84 ccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccagg 183  Q
    ||||| ||| |||||||||| |||||||||| |||||| |||||  ||||||||||||||||||||||||||| |||||| || || |||||||||| ||    
T  31028435 ccaaaatttcctttttgtaaatgtgttaatgagcttttaggttggatctaatgtgcaaaaattatcgatcgagtccgggcaaccgctcggggtcgccggg 31028534  T
Q  184 cgatgaaaccg 194  Q
    || ||||||||    
T  31028535 cggtgaaaccg 31028545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 165
Target Start/End: Complemental strand, 24695572 - 24695502
Alignment:
Q  95 tttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcga 165  Q
    ||||||||||||||||||||||||||||||||||| |||||||  |||||| ||||||  |||| ||||||    
T  24695572 tttttgtaagtgtgttaatgggcttttgggttgagcctaatgttaaaaaatgatcgatttagcctgggcga 24695502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 13647053 - 13646997
Alignment:
Q  144 attatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    ||||||||||||||||||||||| ||||||||||||| || | ||||||||||||||    
T  13647053 attatcgatcgagcccgggcgaccgcccggggtcgccgggtggtgaaaccgcccctg 13646997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 34385519 - 34385575
Alignment:
Q  144 attatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    ||||||||||||||| |||| || ||||||||||||| |||| ||||||||||||||    
T  34385519 attatcgatcgagccagggcaaccgcccggggtcgccgggcggtgaaaccgcccctg 34385575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 102 - 165
Target Start/End: Complemental strand, 3050157 - 3050094
Alignment:
Q  102 aagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcga 165  Q
    |||||||||||||||||||| ||||| |   |||||||||||||||| ||| ||||||||||||    
T  3050157 aagtgtgttaatgggcttttcggttgcgctcaatgtgcaaaaattattgattgagcccgggcga 3050094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 152
Target Start/End: Complemental strand, 24072625 - 24072576
Alignment:
Q  103 agtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgat 152  Q
    |||||||||||||| |||||||||   |||||||||||||||||||||||    
T  24072625 agtgtgttaatgggtttttgggttcgatctaatgtgcaaaaattatcgat 24072576  T

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Target: scaffold0502 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0502
Description:

Target: scaffold0502; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 180
Target Start/End: Complemental strand, 5397 - 5230
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||| | |||||||||| |||||||||||||||||||||||    
T  5397 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgcccaaaattttctttttgtaagtgtgttaa 5298  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcc 180  Q
    | ||||||| | ||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||    
T  5297 ttggcttttagattgggtctaatgtgcaaaaattattgatcgagcccgggcgaccgcccggggtcgcc 5230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0154 (Bit Score: 120; Significance: 2e-61; HSPs: 1)
Name: scaffold0154
Description:

Target: scaffold0154; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 13 - 200
Target Start/End: Complemental strand, 31647 - 31460
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||| ||||||| ||||| |||||||||| | ||||||||||||   |||||||||| | |||| |||||||||||||||||||||||||||||    
T  31647 gagatgaacctgtcaatagtgtgcaaaataaaattactagacctatttgcgagtgagaattttcagattgtccaaatttttctttttgtaagtgtgttaa 31548  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| | | ||||||||| |||||||||||||||||||    
T  31547 tgggcttttgggttgggtctagtgtgcaaaaattatcgatcgagcccgggcgaccgtctggggtcgccgggcgatgaaaccgcccctg 31460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 7e-61; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 14 - 200
Target Start/End: Complemental strand, 17445479 - 17445293
Alignment:
Q  14 agatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaat 113  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||| | |||||||||| | |||||||||||||||||||||||||||||||||||    
T  17445479 agatgaacccgtcaataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattgcccaaatttttctttttgtaagtgtgttaat 17445380  T
Q  114 gggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
     | |||||||||||  |||||||| |||||||||| |||| |||||||||||| ||  ||||||||| ||| |||||||||||||||    
T  17445379 tgacttttgggttggatctaatgtacaaaaattattgatccagcccgggcgaccgcatggggtcgccgggcaatgaaaccgcccctg 17445293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 35907719 - 35907535
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    ||||||||| ||||||||||||||||||||||||||| |||||||||||| | |||||||||| | ||| |||||| ||||||||||||||||||  |||    
T  35907719 gagatgaactcgtcaataatgtgctaaataaaattccgagacctatttgcgtgtgagaattttcagattacccaaaattttctttttgtaagtgtactaa 35907620  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgccc 197  Q
    | ||||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||| ||||||| |||| |||||||||||    
T  35907619 ttggcttttgggttgggtctaatgtgcaaaaattatcgatcaagcccgggcgaccgcccgaggtcgccgggcggtgaaaccgccc 35907535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 16 - 181
Target Start/End: Complemental strand, 7433609 - 7433444
Alignment:
Q  16 atgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaatgg 115  Q
    ||||||||||||||| |||||||||||||||| |||||||||||||  | ||| |||||||| |||||||||| |||||||||||||| |||||||||||    
T  7433609 atgaacccgtcaatagtgtgctaaataaaatttcaagacctatttgtgtgtgacaatttttagattgcccaaaattttctttttgtaaatgtgttaatgg 7433510  T
Q  116 gcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    ||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||| ||||    
T  7433509 gcttttgggttgagtctaatgtgcaaaaattatagatcgagctcgggcgaccgcccggggttgcca 7433444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 13 - 197
Target Start/End: Original strand, 321377 - 321561
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    ||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||||||||||| ||||||||    
T  321377 gagatgaacccgtcaataatgtgttaaataaaattccgagacctatttgcatatgagaattttcagattgcccaaatttttctttttgtaactgtgttaa 321476  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgccc 197  Q
    ||| |||||||||||  |||||||  ||||||||||||||||||||||| |||| |||||   ||||| || | |||||||||||    
T  321477 tggacttttgggttggatctaatgcacaaaaattatcgatcgagcccggacgaccgcccgaaatcgccgggtggtgaaaccgccc 321561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 13 - 197
Target Start/End: Complemental strand, 3829150 - 3828967
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||| |||||| | ||||||||||||||||||||||||||||||||||    
T  3829150 gagatgaacccgtcaatagtgtgctaaataaaattcca-gacctatttgcgtatgaaaattttcagattgcccaaatttttctttttgtaagtgtgttaa 3829052  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgccc 197  Q
    ||  ||||||||||| || |||||||||||||||||||||||| |||| ||||| | ||||||| ||| || |||||||||||||    
T  3829051 tgaacttttgggttgggtttaatgtgcaaaaattatcgatcgaacccgagcgaccgtccggggttgccgggtgatgaaaccgccc 3828967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 26144422 - 26144256
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| | ||||||| ||||| ||||||||||||||||||||||| | | ||| |||||| ||||||||||||||||||||||| ||| ||||||||    
T  26144422 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaa 26144323  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 179  Q
    || |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  26144322 tgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 26144256  T

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Target: chr1; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 13 - 165
Target Start/End: Original strand, 42310941 - 42311093
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    ||||||||||||||||||  || |||||||||||| |||||| ||||||| | ||| |||||| | ||||||||||||||||||||||||| ||||||||    
T  42310941 gagatgaacccgtcaatagcgtactaaataaaatttcaagacttatttgcgtgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 42311040  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcga 165  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42311041 cgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcga 42311093  T

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Target: chr1; HSP #8
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 13 - 181
Target Start/End: Original strand, 32982056 - 32982224
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| | |||||||  |||||||||||||||||||||||||||||  | ||| |||||| | |||| |||||||||||||||||||| | ||||||    
T  32982056 gagatgaatctgtcaatagagtgctaaataaaattccaagacctatttgtgtgtgacaattttcagattgtccaaatttttctttttgtaaatatgttaa 32982155  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    ||||||||| ||||| |||||||||||||||||||||||||| ||||| ||||| ||||||||||||||    
T  32982156 tgggcttttaggttgggtctaatgtgcaaaaattatcgatcgggcccgcgcgaccgcccggggtcgcca 32982224  T

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Target: chr1; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 84 - 201
Target Start/End: Original strand, 41972346 - 41972462
Alignment:
Q  84 ccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccagg 183  Q
    |||||||||||||||||||||||||||||| ||||||| |||||  ||||||||||||||||||||||||||| || |||||| ||||||||||||  |     
T  41972346 ccaaatttttctttttgtaagtgtgttaataggcttttaggttggatctaatgtgcaaaaattatcgatcgag-ccaggcgaccgcccggggtcgctgga 41972444  T
Q  184 cgatgaaaccgcccctgg 201  Q
    || || ||||||||||||    
T  41972445 cggtggaaccgcccctgg 41972462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 54 - 202
Target Start/End: Complemental strand, 33489815 - 33489665
Alignment:
Q  54 cctatttgcatatgagaatttttaaatt--gcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcga 151  Q
    ||||||||| | |||||||||| | |||  || |||||||||||||| |||||||||||||||||||||| | ||||||||||||| |||||||||||||    
T  33489815 cctatttgcgtgtgagaattttcagattttgctcaaatttttcttttagtaagtgtgttaatgggcttttagtttgagtctaatgtacaaaaattatcga 33489716  T
Q  152 tcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctggt 202  Q
     | | ||||  |||| | ||||||||||| || | ||||||||||||||||    
T  33489715 acaatcccgaacgaccgtccggggtcgccgggtggtgaaaccgcccctggt 33489665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 79 - 181
Target Start/End: Complemental strand, 23313340 - 23313237
Alignment:
Q  79 attgcccaaatttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaa-aaattatcgatcgagcccgggcgactgcccggggtc 177  Q
    ||||||||||||||||||||||||| ||||||||||  |||||  |||||||||||||||||| |||| ||| ||||||||||||| || ||||| | ||    
T  23313340 attgcccaaatttttctttttgtaaatgtgttaatgaacttttatgttgagtctaatgtgcaacaaatcatcaatcgagcccgggcaaccgcccgagatc 23313241  T
Q  178 gcca 181  Q
    ||||    
T  23313240 gcca 23313237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 161
Target Start/End: Original strand, 35951427 - 35951493
Alignment:
Q  95 tttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 161  Q
    ||||||| |||||||||||||||| |||||||    ||||||| |||||||||||||||||||||||    
T  35951427 tttttgttagtgtgttaatgggctattgggttcgacctaatgtacaaaaattatcgatcgagcccgg 35951493  T

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Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 200
Target Start/End: Original strand, 48901203 - 48901291
Alignment:
Q  111 aatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    ||||||||||||||||| | |||||||||| |||||||||||||| ||| ||| || |||||| || ||| |||| || |||||||||||    
T  48901203 aatgggcttttgggttgggcctaatgtgcataaattatcgatcga-ccccggccaccgcccggagttgccgggcggtggaaccgcccctg 48901291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 143 - 199
Target Start/End: Complemental strand, 31867014 - 31866958
Alignment:
Q  143 aattatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccct 199  Q
    |||||||| |||| |||||||||| ||||||||||||| |||| |||||||||||||    
T  31867014 aattatcggtcgaacccgggcgaccgcccggggtcgccgggcggtgaaaccgcccct 31866958  T

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Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 200
Target Start/End: Original strand, 44352614 - 44352670
Alignment:
Q  144 attatcgatcgagcccgggcgactgcccggggtcgccaggcgatgaaaccgcccctg 200  Q
    |||||||||||||||||||||||  |||||||||||| |  | ||||||||||||||    
T  44352614 attatcgatcgagcccgggcgacctcccggggtcgccggatggtgaaaccgcccctg 44352670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 33489873 - 33489839
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaatt 47  Q
    |||||||||||||||||| ||||||||||||||||    
T  33489873 gagatgaacccgtcaatagtgtgctaaataaaatt 33489839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Original strand, 41972256 - 41972290
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaatt 47  Q
    |||||||||||||||||| ||||||||||||||||    
T  41972256 gagatgaacccgtcaatagtgtgctaaataaaatt 41972290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 113; Significance: 3e-57; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 13 - 181
Target Start/End: Complemental strand, 18009 - 17841
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| | ||||||| |||||||||||||||| |||||||||||| ||| ||| |||||| | ||||||||||||||||||||||||| ||||||||    
T  18009 gagatgaaactgtcaatagtgtgctaaataaaatttcaagacctatttacatgtgacaattttcagattgcccaaatttttctttttgtaaatgtgttaa 17910  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgcca 181  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||  || |||||||||||    
T  17909 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccggacgatcgctcggggtcgcca 17841  T

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Target: scaffold0002 (Bit Score: 111; Significance: 4e-56; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 13 - 179
Target Start/End: Original strand, 480457 - 480623
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| | ||||||| ||||| ||||||||||||||||||||||| | | ||| |||||| ||||||||||||||||||||||| ||| ||||||||    
T  480457 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaa 480556  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 179  Q
    || |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  480557 tgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccggggtcgc 480623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 109; Significance: 6e-55; HSPs: 1)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 13 - 161
Target Start/End: Complemental strand, 53092 - 52944
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||||||||||||| |||||||||||||||||| |||||||||||||| |||||||||| | |||| |||||||||||||||||||| ||||||||    
T  53092 gagatgaacccgtcaatagtgtgctaaataaaattccgagacctatttgcatgtgagaattttcagattgtccaaatttttctttttgtaaatgtgttaa 52993  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgg 161  Q
    | |||||||||||| | ||||||||||||||||||||||||||||||||    
T  52992 ttggcttttgggttaaatctaatgtgcaaaaattatcgatcgagcccgg 52944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2142 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold2142
Description:

Target: scaffold2142; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 179
Target Start/End: Complemental strand, 689 - 523
Alignment:
Q  13 gagatgaacccgtcaataatgtgctaaataaaattccaagacctatttgcatatgagaatttttaaattgcccaaatttttctttttgtaagtgtgttaa 112  Q
    |||||||| | ||||||| ||||| ||||||||||||||||||||||| | | ||| |||||| ||||||||||||||||||||||| ||| ||||||||    
T  689 gagatgaaactgtcaatagtgtgccaaataaaattccaagacctatttacgtgtgacaattttcaaattgcccaaatttttctttttataaatgtgttaa 590  T
Q  113 tgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgc 179  Q
    || |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||    
T  589 tgagctttttggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgaccgcccgggatcgc 523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0769 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0769
Description:

Target: scaffold0769; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 89 - 198
Target Start/End: Complemental strand, 1367 - 1259
Alignment:
Q  89 tttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcgatg 188  Q
    ||||| |||||| |||||||| ||||||| | |  |||| | ||||||||   ||||||  ||||||||||||||||| ||||||||||||| |||| |     
T  1367 tttttttttttg-aagtgtgtaaatgggcctatatgttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcggta 1269  T
Q  189 aaaccgcccc 198  Q
    ||||||||||    
T  1268 aaaccgcccc 1259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 89 - 185
Target Start/End: Complemental strand, 194118 - 194023
Alignment:
Q  89 tttttctttttgtaagtgtgttaatgggcttttgggttgagtctaatgtgcaaaaattatcgatcgagcccgggcgactgcccggggtcgccaggcg 185  Q
    ||||| |||||| |||||||| ||||||| | | ||||| | ||||||||   ||||||  ||||||||||||||||| ||||||||||||| ||||    
T  194118 tttttttttttg-aagtgtgtaaatgggcctataggttgggcctaatgtgaggaaattacggatcgagcccgggcgaccgcccggggtcgccgggcg 194023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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