View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8084_low_17 (Length: 257)
Name: NF8084_low_17
Description: NF8084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8084_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 8 - 132
Target Start/End: Original strand, 3413973 - 3414097
Alignment:
| Q |
8 |
acattattcttatctaggcttaatacgttgacaatgatgacttattttcaataatttttgaagaaatctaatctggttttttcatattggagccctctag |
107 |
Q |
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| T |
3413973 |
acattattcttatctaggcttaatacgttgacaatgatgacttattttcaataatttttgaagaaatctaatctggttttttcatattggaaccatctag |
3414072 |
T |
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| Q |
108 |
cttgttttcaaagtatttgatctac |
132 |
Q |
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| T |
3414073 |
cttgttttcaaagtatttgatctac |
3414097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 206 - 257
Target Start/End: Original strand, 3414171 - 3414222
Alignment:
| Q |
206 |
atcatggtgatatctcttatttttctagttcatctaattcaactccttaatt |
257 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3414171 |
atcatggtgatatctcttatttttctagttcatctaattcaactccttaatt |
3414222 |
T |
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