View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8084_low_21 (Length: 239)
Name: NF8084_low_21
Description: NF8084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8084_low_21 |
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Alignment Details
Target: chr2 (Bit Score: 223; Significance: 1e-123; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 3432324 - 3432546
Alignment:
| Q |
1 |
caaagtaaccacaacactgtcatcatcatcaactcccaaatcttccagcaagtccgttaatccaaatctacaactactattaatattcttcattgtttgt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3432324 |
caaagtaaccacaacactgtcatcatcatcaactcccaaatcttccagcaagtccgttaatccaaatctacaactactattaatattcttcattgtttgt |
3432423 |
T |
|
| Q |
101 |
tcatgcaaagaatgaggtacattcacaaagctcccagcaaactctgtattaaatggcttaaccaccttatctttatcattaataaacacatcaaacttta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3432424 |
tcatgcaaagaatgaggtacattcacaaagctcccagcaaactctgtattaaatggcttaaccaccttatctttatcattaataaacacatcaaacttta |
3432523 |
T |
|
| Q |
201 |
cacatgctttcgtatcaaacaca |
223 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
3432524 |
cacatgctttcgtatcaaacaca |
3432546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 203
Target Start/End: Original strand, 3426151 - 3426356
Alignment:
| Q |
1 |
caaagtaaccacaacactgtcatcatcatcaactcccaaatcttccagcaagtccgttaatccaaatctacaactactattaatattcttcattgtttgt |
100 |
Q |
| |
|
||||||||||||||| || |||||||| ||| ||||||||||||||| ||| ||||||||||||| || ||| ||||||| | |||||| || | || |
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| T |
3426151 |
caaagtaaccacaacgctatcatcatcctcagctcccaaatcttccaacaaatccgttaatccaacccttaaacaactattagtcttcttctttttgtga |
3426250 |
T |
|
| Q |
101 |
tcatgcaaagaatgaggtacattcacaaagctcccagcaaactctgtattaaatggcttaaccacctt---atctttatcattaataaacacatcaaact |
197 |
Q |
| |
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||||| ||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| |||||| ||||| ||||||||| || |||||||||| |
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| T |
3426251 |
tcatgggaagaatgaggtacattcacaaagcttccagcaaactccgtattaactggcttaatcaccttatcatcttcatcattaatgaaaacatcaaact |
3426350 |
T |
|
| Q |
198 |
ttacac |
203 |
Q |
| |
|
| |||| |
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| T |
3426351 |
taacac |
3426356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 82; Significance: 8e-39; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 11913186 - 11913093
Alignment:
| Q |
1 |
caaagtaaccacaacactgtcatcatcatcaactcccaaatcttccagcaagtccgttaatccaaatctacaactactattaatattcttcatt |
94 |
Q |
| |
|
||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
11913186 |
caaagtaaccacaacactgtcatcatcgtcagctcccaaatcttccagcaagtccgttaatccaaatctgcaactactattaatattcttcatt |
11913093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 11898143 - 11897938
Alignment:
| Q |
1 |
caaagtaaccacaacactgtcatcatcatcaactcccaaatcttccagcaagtccgttaatccaaatctacaactactattaatattcttcattgtttgt |
100 |
Q |
| |
|
|||||||||||||| || |||||||| ||| |||||||||||| || ||| ||||||||||||| || ||| |||||| | |||||| || | || |
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| T |
11898143 |
caaagtaaccacaatgctatcatcatcctcagctcccaaatctttcaacaaatccgttaatccaacccttaaacagctattagtcttcttctttttgtga |
11898044 |
T |
|
| Q |
101 |
tcatgcaaagaatgaggtacattcacaaagctcccagcaaactctgtattaaatggcttaaccacctt---atctttatcattaataaacacatcaaact |
197 |
Q |
| |
|
||||| ||||||||||||||||||||||||| ||||||||||| ||||||| |||||||| | |||| ||||| ||||||||| || |||||||||| |
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|
| T |
11898043 |
tcatgggaagaatgaggtacattcacaaagcttccagcaaactccgtattaactggcttaatctccttagcatcttcatcattaatgaaaacatcaaact |
11897944 |
T |
|
| Q |
198 |
ttacac |
203 |
Q |
| |
|
| |||| |
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|
| T |
11897943 |
taacac |
11897938 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 146 - 220
Target Start/End: Complemental strand, 11913066 - 11912993
Alignment:
| Q |
146 |
gtattaaatggcttaaccaccttatctttatcattaataaacacatcaaactttacacatgctttcgtatcaaac |
220 |
Q |
| |
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||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| | |||||||||||| |
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| T |
11913066 |
gtattaaatggcttaaccaccttat-ttcatcattaataaacacatcaaactttacacgtatgttcgtatcaaac |
11912993 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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