View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8084_low_5 (Length: 599)
Name: NF8084_low_5
Description: NF8084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8084_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 513; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Complemental strand, 37584868 - 37584282
Alignment:
| Q |
1 |
tgcaatagtaatcacaagtctctgatagaattcttccacgaaaatgcatatcacttaatttctaattct---------ctaccatgtaaatcaatgatgc |
91 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
37584868 |
tgcaatagtaatcacaagtctctgatagaattcttccacgaaaatgcatatcacttaatttctaattcttctaattctctaccatgtaaatcaatgatgc |
37584769 |
T |
|
| Q |
92 |
cttctcccaataagaaagtaaccagggggaaagagggttttttgtactcttctactgtagtctcactacataaacactctctctaatactcacgttttta |
191 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37584768 |
cttctcccaataaaaaagtaaccagggg-aaagagggttttttgtactcttctactgcagtctcactacataaacactctctctaatactcacgtttt-- |
37584672 |
T |
|
| Q |
192 |
tttgatgaaataaatatgaatccctcactttggaaataagtccaatatgaaattgtgggagtcacgttttcaccttgtaagagagagtattagaaagaat |
291 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37584671 |
---gatgaaataaatatgaatccctcactttggaaataagtccaatatgaaattgtgggagtcacattttcaccttgtaagagagagtattagaaagaat |
37584575 |
T |
|
| Q |
292 |
gttaaaaagaaagtgctattaacacttcatgtccatataatttagcaatgagaaatggttgatcctatttcatctccctcattccacggttaattctgag |
391 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37584574 |
gttaaaaagaaagtgctattaacacttctcgtccatataatttagcaatgagaaatggttgatcctatttcatctccctcattccacggttaattctgag |
37584475 |
T |
|
| Q |
392 |
caatgagcatgtcactaaagttgtatttgtcagcacctctcactgagcatgtccttgatcccacggtaaaatatttatgttttcttaacaataatagcaa |
491 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37584474 |
caatgagcatgtcactaaagttgtatttgtcagcacctctcactgagcatgtccttgatcccacggtaaaatatttatgttttcttaacaataatagcaa |
37584375 |
T |
|
| Q |
492 |
actatatagcatccaatctatcatcataactcaaatattaatttaatctcacaaataatcaaaatacagttatttattatcaacggtgttcat |
584 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37584374 |
actatatagcatccaatctatcatcataactcaaatattaatttaatctcacaaataatcaaaatacagttatttattatcaacggtgttcat |
37584282 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University