View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8084_low_6 (Length: 484)
Name: NF8084_low_6
Description: NF8084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8084_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 413; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 19 - 462
Target Start/End: Original strand, 7570285 - 7570729
Alignment:
| Q |
19 |
ggtatctgactggacacaccacaaccttgaaacaacgatctttccccacaaaaatggttctgtcctaaattatttaattatacagcaaccaatcacataa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7570285 |
ggtatctgactggacacaccacaaccttgaaacaacgatctttccccacaaaaatggttctgtcctaaattatttaattatacagcaaccaatcacataa |
7570384 |
T |
|
| Q |
119 |
tagattgtcctaaattaaccattgtgcaagtaacagcaaaactgaaattgtatatggcccaatctcagcaataaccagaattggttctgttccatatttc |
218 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7570385 |
tagattgtcctaaattaaccattgtgcaagtaacagaaaaactgaaattgtatatggcccaatctcagcaataaccagaattggttctgttccatatttc |
7570484 |
T |
|
| Q |
219 |
attgattaacactccatatgtccttagggtaagctagatacgtatagaagtacattaaaagcacaaaaccatagagtaaactcttaagttattggataac |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||| ||| |
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| T |
7570485 |
attgattaacactccatatgtccttagggtaagctagatacgtatagaagtacattaaaagcacaacaacatagagtaaactcttaagttattggacaac |
7570584 |
T |
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| Q |
319 |
tccataatgtcctt-ggggttttttattcatttaatatgaactgtatgatttattgattttaacgattgagatttggtgcaggtcatgtaacttacatct |
417 |
Q |
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| T |
7570585 |
tccataatgtccttagggtttttttattcatttaatatgaactgtatgatttattgattttaacgattgagatttggtgcaggtcatgtaacttacatct |
7570684 |
T |
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| Q |
418 |
ggtgtcaggatcctctctcactcttcgtgtgcacggatgcgcatg |
462 |
Q |
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| T |
7570685 |
ggtgtcaggatcctctctcactcttcgtgtgcacgggtgcgcatg |
7570729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 91 - 315
Target Start/End: Original strand, 7548477 - 7548702
Alignment:
| Q |
91 |
tttaattatacagcaaccaatcacataatagattgtcctaaattaaccattgtgcaagtaacagcaaaactgaaattgtatatggcccaatctcagcaat |
190 |
Q |
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||||||| |||| ||||| ||||||| |||||||||||||||||| | || |||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
7548477 |
tttaattgtacatcaaccgatcacatgatagattgtcctaaattagtccttatgcaagtaacagcaaaactgaaattgcatatggcccagtctcagcaat |
7548576 |
T |
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| Q |
191 |
aaccagaattggttctgttccatatttcattgattaacactccat-atgtccttagggtaagctagatacgtatagaagtacattaaaagcacaaaacca |
289 |
Q |
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| T |
7548577 |
ggccggaattggttctgtcccatattccaatgattaacactgcataatgtccttagggtgcattttatacgcatagaaggacagtaaaagcacaacaaca |
7548676 |
T |
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| Q |
290 |
tagagtaaactcttaagttattggat |
315 |
Q |
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|||| |||||||| ||||||||||| |
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| T |
7548677 |
tagaacaaactcttgagttattggat |
7548702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 7548364 - 7548403
Alignment:
| Q |
19 |
ggtatctgactggacacaccacaaccttgaaacaacgatc |
58 |
Q |
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| T |
7548364 |
ggtatctgactggacacaccacaaccttgaaacaacgatc |
7548403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 99; Significance: 1e-48; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 12047696 - 12047586
Alignment:
| Q |
19 |
ggtatctgactggacacaccacaaccttgaaacaacgatctttccccacaaaaatggttctgtcctaaattatttaattatacagcaaccaatcacataa |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12047696 |
ggtatctgactggacacaccacaaccttgaaacaacgatccttccccgcaaaaatggttctgtcctaaattatttaattatacagcaaccaatcacataa |
12047597 |
T |
|
| Q |
119 |
tagattgtcct |
129 |
Q |
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||||| ||||| |
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| T |
12047596 |
tagatggtcct |
12047586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 160 - 331
Target Start/End: Complemental strand, 12047587 - 12047416
Alignment:
| Q |
160 |
ctgaaattgtatatggcccaatctcagcaataaccagaattggttctgttccatatttcattgattaacactccatatgtccttagggtaagctagatac |
259 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||| | | |||||||||| | ||||||||||||||||| |||||||| | |||||| |
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| T |
12047587 |
ctgaaattgcatatggcccaatctcagcaataaccagaattggttttctcccatatttcaatcattaacactccatatgttcttagggtgtgttagatat |
12047488 |
T |
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| Q |
260 |
gtatagaagtacattaaaagcacaaaaccatagagtaaactcttaagttattggataactccataatgtcct |
331 |
Q |
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| T |
12047487 |
gcatagaagtacagtaaaagcacaataacatagggcaaacacttaagctattggataattccacaatgtcct |
12047416 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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