View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8084_low_7 (Length: 439)
Name: NF8084_low_7
Description: NF8084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8084_low_7 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 20 - 431
Target Start/End: Original strand, 15493666 - 15494077
Alignment:
| Q |
20 |
attagggtgcgaagttgaacttctgaccaacttatggcatgcttgttgcaccaattgaagctaaagcatgtgcctttctttttcaaaaaacaactgcatc |
119 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
15493666 |
attagggtgcaaagttgaacttccgaccaacttatggcatgctcgttgcaccaattgaaactaaagcatatgcctttctttttcaaaaaacaactgcatc |
15493765 |
T |
|
| Q |
120 |
aaacgtgatgtctaaaaccatttagttgagtgcaacaatgacaaatccaatgtcgtctccccactacacaaatatctcatttgatacatatcaaaactcg |
219 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
15493766 |
aaacgtgatgtctaaaaccgtttagttgagtgcaacaatgacaaatccaatgtcttctccccactacacaaatatctcctttgatacatatcaaaactcg |
15493865 |
T |
|
| Q |
220 |
taaaacaattatttttcattttgaccgttcatattttttatcaacatattaacttatgaattggttattgtcatctgttattagattatgcaactaaaca |
319 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15493866 |
taaaacaattatttttcattttgaccattcatatttttgatcaacatattaacttatgaattggttattgtcatctgttattagattatgcaactaaaca |
15493965 |
T |
|
| Q |
320 |
ctaaaatgttgcgtttcgaacaagaagaaataatggtggctttgtgtggtatcttggatagtcatttgaggtaattattgttatgttttcaattactttg |
419 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15493966 |
ctaaaatgttgcgtttcgaacaagaagaaataatggtggctttgtgtggtatctttgatagtcatttgaggtaattattgttatgttttcaattactttg |
15494065 |
T |
|
| Q |
420 |
tggtatattctt |
431 |
Q |
| |
|
|||||| ||||| |
|
|
| T |
15494066 |
tggtattttctt |
15494077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 207 - 374
Target Start/End: Original strand, 7354490 - 7354658
Alignment:
| Q |
207 |
atatcaaaactcgtaaaacaattatttttcattttgaccgttcatattttttatcaacatattaacttatgaattggttattgtcatctgttattagatt |
306 |
Q |
| |
|
||||||||||| |||||||||| |||||| |||||| || ||| |||| || |||||||||||||||||||||| ||| || | |||||||||| |
|
|
| T |
7354490 |
atatcaaaacttgtaaaacaatcattttttattttggtacttaataattttgattggcatattaacttatgaattggttgatgttattttttattagatt |
7354589 |
T |
|
| Q |
307 |
atgcaactaaacactaaaatgttgcgtttcgaacaagaag-aaataatggtggctttgtgtggtatctt |
374 |
Q |
| |
|
||||||||||| || ||| |||||| || |||||||| | ||||||||||| |||||||||| ||||| |
|
|
| T |
7354590 |
atgcaactaaatgctgaaaggttgcgctttgaacaagaggaaaataatggtgactttgtgtggcatctt |
7354658 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University