View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8084_low_8 (Length: 416)
Name: NF8084_low_8
Description: NF8084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8084_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 348; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 17 - 380
Target Start/End: Original strand, 37084829 - 37085192
Alignment:
| Q |
17 |
ctgtgccacatttcggatttgatttgtttgaagcctgtgaatggttgacaactgttgagcaaaacacttttcaaagttttgttgataaactttgttgatc |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37084829 |
ctgtgccacatttcggagttgatttgtttgaagcctgtgaattgttgacaactgttgagcaaaacacttttcaaagttttgttgataaactttgttgatc |
37084928 |
T |
|
| Q |
117 |
atacaaaaacgctcccccagaagaccatagtatggacgataaactttttcatacctgcagcattgtagaatcatattgcataattggatctcttgacctt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37084929 |
atacaaaaacgctcccccagaagaccatagtatggacgataaactttttcatacctgcagcattgtagaatcatattgcataattggatctcttgacctt |
37085028 |
T |
|
| Q |
217 |
tctggcgatgaataattctgagaagcttatgaccagcttcctcaaaatctaaacaagacataatggtcaaatatatagcccttcgaagattcacaagatt |
316 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37085029 |
tctggcgatgaataattctgagaagcttatgaccagcttcctcaaaatctaaacaagacataatggtcaaatatatagcccttcgaagattcacaagatt |
37085128 |
T |
|
| Q |
317 |
ggtatcggtttcatcccttatctgcatatgcttctcgccatcttcttcatatatttgtgctgcc |
380 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |
|
|
| T |
37085129 |
ggtatcggtttcatcccttatctgcatctgcttctcgccatcttcttcatacatttgtgctgcc |
37085192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 17 - 366
Target Start/End: Complemental strand, 37184451 - 37184102
Alignment:
| Q |
17 |
ctgtgccacatttcggatttgatttgtttgaagcctgtgaatggttgacaactgttgagcaaaacacttttcaaagttttgttgataaactttgttgatc |
116 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37184451 |
ctgtgccacatttcggagttgatttgtttgaagcctgtgaattgttgacaactgttgagcaaaacacttttcaaagttttgttgataaactttgttgatc |
37184352 |
T |
|
| Q |
117 |
atacaaaaacgctcccccagaagaccatagtatggacgataaactttttcatacctgcagcattgtagaatcatattgcataattggatctcttgacctt |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37184351 |
atacaaaaacgctcccccagaagaccatagtatggacgataaactttttcatacctgcagcattgtagaatcatattgcataattggatctcttgacctt |
37184252 |
T |
|
| Q |
217 |
tctggcgatgaataattctgagaagcttatgaccagcttcctcaaaatctaaacaagacataatggtcaaatatatagcccttcgaagattcacaagatt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
37184251 |
tctggcgatgaataattctgagaagcttatgaccagcttcctcaaaatctaaacacgacataatggtcagatatatagcccttcgaagattcacaagatt |
37184152 |
T |
|
| Q |
317 |
ggtatcggtttcatcccttatctgcatatgcttctcgccatcttcttcat |
366 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37184151 |
ggtatcggcttcatcccttatctgcatatgcttctcgccatcttcttcat |
37184102 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 76 - 140
Target Start/End: Original strand, 14712516 - 14712580
Alignment:
| Q |
76 |
caaaacacttttcaaagttttgttgataaactttgttgatcatacaaaaacgctcccccagaaga |
140 |
Q |
| |
|
|||||||||| ||||| |||| ||||| ||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
14712516 |
caaaacacttctcaaaattttcttgatgcactttgttgatcatacaaaaacgctacccaagaaga |
14712580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 237 - 344
Target Start/End: Complemental strand, 11339206 - 11339099
Alignment:
| Q |
237 |
agaagcttatgaccagcttcctcaaaatctaaacaagacataatggtcaaatatatagcccttcgaagattcacaagattggtatcggtttcatccctta |
336 |
Q |
| |
|
|||||||||||||| |||||||||||||||| || ||||| || || | ||| |||| ||| || ||||| |||||||| || || |||||||| ||| |
|
|
| T |
11339206 |
agaagcttatgacctgcttcctcaaaatctacactggacattattgttagatagatagtcctccgcagattgacaagattagtctctgtttcatctttta |
11339107 |
T |
|
| Q |
337 |
tctgcata |
344 |
Q |
| |
|
|||||||| |
|
|
| T |
11339106 |
tctgcata |
11339099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University