View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8084_low_9 (Length: 391)
Name: NF8084_low_9
Description: NF8084
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8084_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 18 - 342
Target Start/End: Original strand, 24728538 - 24728862
Alignment:
| Q |
18 |
ggaggatcctagcatagaactcagaggccattttgttggtaagtttatttcattcattacctgtttcatgttcaaccagggttttaaattgtggtcatgg |
117 |
Q |
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| T |
24728538 |
ggaggatcctagcatagaactcagaggccattttgttggtaagtttatttcattcattacctgtttcatgttcaaccagtgttttaaattgtggtcatgg |
24728637 |
T |
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| Q |
118 |
taacagttgtggccacgtcgtgatctttgacattacaaagaatcgcagtaaaacacaggcctcaatcgttgttgtgttgtattttccgaaaaatcaaaaa |
217 |
Q |
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| T |
24728638 |
taacagttgtggccacgtcgtgatctttgacattgcaaagaatcgcagtaaaacacaggcctcaatcgttgttttgttgtattttccgaaaaatcaaaaa |
24728737 |
T |
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| Q |
218 |
ctgttatgttgaagcccaaatcatggttgcgaaccttttatttacaaccctattaacctttattcccataagtctgtctttcatgtaaagctttttccac |
317 |
Q |
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| T |
24728738 |
ctgttatgttgaagcccaaatcatggttgcgaaccttttatttacaaccctattaacctttattcccataagtctgtctttcatgtaaagctttttccac |
24728837 |
T |
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| Q |
318 |
ttttatgtgtagtaattagtcagag |
342 |
Q |
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| T |
24728838 |
ttttacgtgtagtaattagtcagag |
24728862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 34 - 90
Target Start/End: Original strand, 24689047 - 24689103
Alignment:
| Q |
34 |
gaactcagaggccattttgttggtaagtttatttcattcattacctgtttcatgttc |
90 |
Q |
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| T |
24689047 |
gaactcagagggcattttgttggttagtttattacattcattacctttctcatgttc |
24689103 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 93 - 151
Target Start/End: Original strand, 24689208 - 24689266
Alignment:
| Q |
93 |
ccagggttttaaattgtggtcatggtaacagttgtggccacgtcgtgatctttgacatt |
151 |
Q |
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| T |
24689208 |
ccagggttttaaatagtggtcgtggcaacagttgtggccacatcgcaatcttggacatt |
24689266 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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