View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_high_10 (Length: 555)
Name: NF8085_high_10
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 392; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 9 - 536
Target Start/End: Complemental strand, 38291823 - 38291292
Alignment:
| Q |
9 |
tcgaagaatataaacataaaaataactatagaccaaggtctacataaataaatctacacacacnnnnnnn----tcactaaaaagtgaaaatatatttat |
104 |
Q |
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| T |
38291823 |
tcgaaaaatataaacataaaaataactatagaccaaggtctacataaataaatctacacacaaaaaaaaaaaaatcactaaaaagtgaaaatatatt-at |
38291725 |
T |
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| Q |
105 |
tannnnnnnngcaagataaaaaagtgaatatatgtttactggttgaagttgcgaatataagatataaatatagata--gaattatgaaaaataaaattaa |
202 |
Q |
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|| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
38291724 |
tattttttttgtaagataaaaaagtgaatatatgtttactggttgaagttgcgaatataagatataaatatatatatagaattatgaaaaataaaattaa |
38291625 |
T |
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| Q |
203 |
agtttagtcaaatgttccagaacaaaacacgttaacttaaattataatcttatcccattgcaaatttaagaagaatcacaacatcatgagttgaggattg |
302 |
Q |
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| T |
38291624 |
agtttagtcaaatgttccagaacaaaacacgttaacttaaattataatcttatcccattgcaaatttaggaagaatcacaacatcatgagttgaggattg |
38291525 |
T |
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| Q |
303 |
atcaccatttggtagatgtcttnnnnnnnttccctccgctccaatgaagatattaatatatgcatagataatttcagaataattaaagagaaaatgagtc |
402 |
Q |
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|||||||||||||||||||||| | |||||||||| |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
38291524 |
atcaccatttggtagatgtcttaaaaaattcccctccgctctaatgaagacattaatatatgcatagataatttcagaataatt-aagagaaaatgagtc |
38291426 |
T |
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| Q |
403 |
atagaacaacttggtgagacaaatgttaagtatctctcatcggttcgaataacgtgtctcgaggaataaggcatgcacacgccaaaaaatggcacaacac |
502 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38291425 |
atagaacaacttggtgagacaaatgttaagtatctctcatcggttcgaataacgtgtctcgaggaataaggcatgcacacgccaaaaaatggcacaacac |
38291326 |
T |
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| Q |
503 |
ttgaaaggttgcataatgaaatagaaatagatag |
536 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
38291325 |
ttgaaaggttgcataatgaaatagaaatagatag |
38291292 |
T |
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