View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8085_high_12 (Length: 506)

Name: NF8085_high_12
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8085_high_12
NF8085_high_12
[»] chr1 (3 HSPs)
chr1 (301-486)||(33905931-33906116)
chr1 (138-261)||(33906186-33906311)
chr1 (19-129)||(33910106-33910216)
[»] chr5 (1 HSPs)
chr5 (140-261)||(36233748-36233868)
[»] chr3 (2 HSPs)
chr3 (138-244)||(39286634-39286740)
chr3 (149-192)||(36468627-36468670)
[»] chr4 (1 HSPs)
chr4 (170-261)||(30219202-30219294)
[»] scaffold0352 (1 HSPs)
scaffold0352 (171-252)||(8670-8752)
[»] chr2 (1 HSPs)
chr2 (150-191)||(21188779-21188820)


Alignment Details
Target: chr1 (Bit Score: 143; Significance: 7e-75; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 301 - 486
Target Start/End: Complemental strand, 33906116 - 33905931
Alignment:
Q  301 cactacataaaaaatgaacacgcaattcttttcttggcacaacttttggtatctatacaatttttatccgaagagagtcaga-ttatcatcactatcgcc 399  Q
    |||||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| | || ||||||||||||||    
T  33906116 cactacataaaaaatgaacacgta-ttcttctcttggcacaacttttggtatctatacaatttttatctgaagagagtcaaagttctcatcactatcgcc 33906018  T
Q  400 aatggctactatcactcaccatcattaactgctattattgatgaatcatcacgaccaccattattgccttttaggacatcatcacca 486  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||    
T  33906017 aatggctactatcactcaccatcattaactgctattattgttgaatcatcacgaccaccattattgccttttaggccatcatcacca 33905931  T

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Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 138 - 261
Target Start/End: Complemental strand, 33906311 - 33906186
Alignment:
Q  138 ataagcaagatttttattaaaacgaatacaagaggtactcgaagcctattacaataagt-caaaaaattagat-ttttgaagatatacaatgttgttcaa 235  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||| || ||||||||||||||||||||||||||    
T  33906311 ataagcaagatttttattaaaacgaatacaagagatactcgaagcctattacaataagtaaaaaaaattacatattttgaagatatacaatgttgttcaa 33906212  T
Q  236 ccaccgatcctagaaaacaaattttt 261  Q
    |||||||||||||||||||| |||||    
T  33906211 ccaccgatcctagaaaacaatttttt 33906186  T

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Target: chr1; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 19 - 129
Target Start/End: Complemental strand, 33910216 - 33910106
Alignment:
Q  19 gcaaagataaagcgtctccgcttcatgtgaagtacgtcccgtggtcacacggaacacacctcgcggtttgggcagaatttatcaaaacatatttgaagtc 118  Q
    ||||||||||||||||||||||| |||||||||||| | |||||||||||||||||  |||  ||||||||||||||||||||||||||||||| |||||    
T  33910216 gcaaagataaagcgtctccgctttatgtgaagtacgcctcgtggtcacacggaacatgcctaacggtttgggcagaatttatcaaaacatatttcaagtc 33910117  T
Q  119 acacaaaagta 129  Q
    |||||||||||    
T  33910116 acacaaaagta 33910106  T

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Target: chr5 (Bit Score: 51; Significance: 5e-20; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 140 - 261
Target Start/End: Original strand, 36233748 - 36233868
Alignment:
Q  140 aagcaagatttttattaaaacgaatacaagaggtactcgaagcctattacaataagtcaaaaaattagat-ttttgaagatatacaatgttgttcaacca 238  Q
    |||||||||||| ||||||  ||||||||| ||||||| ||| | ||||||||||||||| |||||| || ||||||||||||||||||  |||||||||    
T  36233748 aagcaagatttt-attaaattgaatacaag-ggtactccaagtccattacaataagtcaagaaattacatgttttgaagatatacaatggggttcaacca 36233845  T
Q  239 ccgatcctagaaaacaaattttt 261  Q
    |  |||| |||||||||||||||    
T  36233846 ctaatccgagaaaacaaattttt 36233868  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 138 - 244
Target Start/End: Complemental strand, 39286740 - 39286634
Alignment:
Q  138 ataagcaagatttttattaaaacgaatacaagaggtactcgaagcctattacaataagtcaaaaaattagatttttg-aagatatacaatgttgttcaac 236  Q
    ||||||||||||||  ||||| ||| |||||||||||||||| |   ||||||||||||||| |||||| || | || |||| ||||||||  |||||||    
T  39286740 ataagcaagattttg-ttaaatcgagtacaagaggtactcgatggtcattacaataagtcaataaattacatgtgtgaaagacatacaatggggttcaac 39286642  T
Q  237 caccgatc 244  Q
    ||||||||    
T  39286641 caccgatc 39286634  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 149 - 192
Target Start/End: Original strand, 36468627 - 36468670
Alignment:
Q  149 ttttattaaaacgaatacaagaggtactcgaagcctattacaat 192  Q
    |||||||||||||| |||||| |||||||||| |||||||||||    
T  36468627 ttttattaaaacgagtacaaggggtactcgaaacctattacaat 36468670  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 170 - 261
Target Start/End: Original strand, 30219202 - 30219294
Alignment:
Q  170 aggtactcgaagcctattacaataagtcaaaaaattagat-ttttgaagatatacaatgttgttcaaccaccgatcctagaaaacaaattttt 261  Q
    |||||||||||||| ||||||||||||||| |||||| || ||||||||| ||| |||   ||| ||||||| |||  || ||||||||||||    
T  30219202 aggtactcgaagcccattacaataagtcaagaaattacatgttttgaagacatataatagggtttaaccaccaatctgaggaaacaaattttt 30219294  T

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Target: scaffold0352 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 171 - 252
Target Start/End: Complemental strand, 8752 - 8670
Alignment:
Q  171 ggtactcgaagcctattacaataagtcaaaaaattagat-ttttgaagatatacaatgttgttcaaccaccgatcctagaaaa 252  Q
    ||||||| ||||| |||| ||||||||||||||| | || ||||||||| ||||||||  |||||| |||| |||| ||||||    
T  8752 ggtactcaaagcccattataataagtcaaaaaataacatgttttgaagacatacaatggggttcaagcaccaatccaagaaaa 8670  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 191
Target Start/End: Complemental strand, 21188820 - 21188779
Alignment:
Q  150 tttattaaaacgaatacaagaggtactcgaagcctattacaa 191  Q
    ||||||||||||| |||||| |||||||||| ||||||||||    
T  21188820 tttattaaaacgagtacaaggggtactcgaaacctattacaa 21188779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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