View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_high_18 (Length: 435)
Name: NF8085_high_18
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_high_18 |
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| [»] chr7 (8 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 231; Significance: 1e-127; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 182 - 435
Target Start/End: Original strand, 4592527 - 4592783
Alignment:
| Q |
182 |
cagatgtagcagaccaagttgatgtgttttaatattaaactagtttcctaccaaagtgctatataccaattgtatggttttaaatcgaatttgagatctt |
281 |
Q |
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| T |
4592527 |
cagatgtagcagaccaagttgatgtgtttttatattaaactagtttcctaccaaagtgctatataccaattgtatggttttaaatcgaatttgagatctt |
4592626 |
T |
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| Q |
282 |
tataacagcatcacagcagttat---ttcaattgcatcagccacatttttccgcaatataaagaaggttcatagtataacagaatccataatttaaaact |
378 |
Q |
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| T |
4592627 |
tgtaacggcatcacagcagttattatttcaattgcatcagccacatttttccgcaatataaagaaggttcatagtataacagaatccataatttaaaact |
4592726 |
T |
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| Q |
379 |
atgataccgctaaaaatggaacgaaagatgcaaatcagaaagcttgataatccctaa |
435 |
Q |
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| T |
4592727 |
atgataccgctaaaaatggaacgaaagatgcaaatcagaaagcttgataatccctaa |
4592783 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 8 - 179
Target Start/End: Original strand, 4592224 - 4592395
Alignment:
| Q |
8 |
tgtcgaagaatatgtagaatgagattaatctagaccaatgttttactctagagaccaattatgctaaagcaatgcaatcataaatcgataacaaaaatta |
107 |
Q |
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| T |
4592224 |
tgtcaaagaatatgtagaatgagattaatctagaccaatgttttactctagagaccaattatgctaaagcaatgcaatcataaatcgataacaaaaatta |
4592323 |
T |
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| Q |
108 |
acatgccctgtcatgatttgctgtcagcatttcctactgtggtagtctcggccataggtcaaagatcggacg |
179 |
Q |
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| T |
4592324 |
acatgccctgtcatgatttgctgtcagcatttcctactgtggtagtctcggccatatgtcaaagatcggacg |
4592395 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 113 - 163
Target Start/End: Original strand, 4584525 - 4584575
Alignment:
| Q |
113 |
ccctgtcatgatttgctgtcagcatttcctactgtggtagtctcggccata |
163 |
Q |
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| T |
4584525 |
ccctgtcatgatttgcagtcagcatttcctactgttgtaatctcggccata |
4584575 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 8 - 88
Target Start/End: Original strand, 4600658 - 4600740
Alignment:
| Q |
8 |
tgtcgaagaatatgtagaatgagattaa-tctagaccaatgttttactctagagaccaattatgctaaagc-aatgcaatcat |
88 |
Q |
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| T |
4600658 |
tgtcaaagaatatgtagaatgagatgaaatgtaaactaatgttttacacaagagaccaattatgctaaaacaaatgcaatcat |
4600740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 8 - 53
Target Start/End: Original strand, 4584480 - 4584525
Alignment:
| Q |
8 |
tgtcgaagaatatgtagaatgagattaatctagaccaatgttttac |
53 |
Q |
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| T |
4584480 |
tgtcaaagaatatgtagaatgagattaatctagacaaatattttac |
4584525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 4573253 - 4573293
Alignment:
| Q |
8 |
tgtcgaagaatatgtagaatgagattaatctagaccaatgt |
48 |
Q |
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| T |
4573253 |
tgtcaaagaatatgtaggatgagattaatctagaccaatgt |
4573293 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 182 - 226
Target Start/End: Original strand, 4584743 - 4584787
Alignment:
| Q |
182 |
cagatgtagcagaccaagttgatgtgttttaatattaaactagtt |
226 |
Q |
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| T |
4584743 |
cagatgtagcagacgaagttgatgcgttttcgtattaaactagtt |
4584787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 379 - 435
Target Start/End: Original strand, 4584970 - 4585025
Alignment:
| Q |
379 |
atgataccgctaaaaatggaacgaaagatgcaaatcagaaagcttgataatccctaa |
435 |
Q |
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| T |
4584970 |
atgataccagtaaaaatggaactaaa-atgaaaatctgaaagcttgataatccctaa |
4585025 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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