View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_high_23 (Length: 375)
Name: NF8085_high_23
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_high_23 |
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Alignment Details
Target: chr2 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 20 - 359
Target Start/End: Complemental strand, 7902145 - 7901806
Alignment:
| Q |
20 |
taaatgaatgtattattgtatgtttagttctttctatacatattttcattccactttaagtgacttaaagctcatccacctcatatctttttacatatta |
119 |
Q |
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| T |
7902145 |
taaatgaatgtattattgtatgtttagttctttctatacatattttcataccactttaagtgacttaaagctcatccacctcatatctttttacatatta |
7902046 |
T |
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| Q |
120 |
attatcttgtgtgaattatatgtaggttatccttatgatatgaccgaggaggagtgctatataagtgtgttcatgataataaagtggagaattattctat |
219 |
Q |
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| T |
7902045 |
attatgttgtgtgaattatgtgtaagttatccttatgatatgaccgaggaggagtgctatttaagtgtgttcatgataataaagaggagaattattctat |
7901946 |
T |
|
| Q |
220 |
cacatatatcatagtgttcttgaaagtttgttgggttattatttatgtttaaactgagttgtaaggctctaagattatgacatcatgcccgagtttaata |
319 |
Q |
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| T |
7901945 |
cacatatatcatagtgttcttgaaagtttgttgggttattatttatgtttaaactgagttgtaaggctctaagattatgacatcatgcccgagtttaata |
7901846 |
T |
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| Q |
320 |
atatggtctcgatttattttgttggttctagagaaaatat |
359 |
Q |
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| T |
7901845 |
atatggtctcgatttattttgttggttcttgagaaaatat |
7901806 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 197 - 344
Target Start/End: Original strand, 24843689 - 24843835
Alignment:
| Q |
197 |
aataaagtggagaattattctatcacatatatcatagtgttcttgaaagtttgttgggttattatttatgtttaaactgagttgtaaggctctaagatta |
296 |
Q |
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| T |
24843689 |
aataaagcggatagttattctctcacctatattatgttgttctttaaagtttgttggattattgtgtatgtttaaattgagttct-aggctctgatgttg |
24843787 |
T |
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| Q |
297 |
tgacatcatgcccgagtttaataatatggtctcgatttattttgttgg |
344 |
Q |
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| T |
24843788 |
tgacattaggaccgagtttaataatatgtacttgacttattttgttgg |
24843835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 234 - 324
Target Start/End: Original strand, 16652478 - 16652567
Alignment:
| Q |
234 |
tgttcttgaaagtttgttgggttattatttatgtttaaactgagttgtaaggctctaagattatgacatcatgcccgagtttaataatatg |
324 |
Q |
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| T |
16652478 |
tgttctttaaagtttgttggattattgtttatgtttaaattgagttct-aggctctgatattgtgacatcagggttgagtttaataatatg |
16652567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 360
Target Start/End: Original strand, 24754891 - 24755016
Alignment:
| Q |
234 |
tgttcttgaaagtttgttgggttattatttatgtttaaactgagttgtaaggctctaagattatgacatcatgcccgagtttaataatatggtctcgatt |
333 |
Q |
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||||||| |||||||| ||| || || ||||| |||||| |||||| || |||||| | ||| | |||||| | |||| |||||||||||| ||| || | |
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| T |
24754891 |
tgttctttaaagtttggtggattgttgtttatatttaaattgagtttta-ggctctgatattgtaacatcaggaccgaatttaataatatgttcttgact |
24754989 |
T |
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| Q |
334 |
tattttgttggttctagagaaaatatt |
360 |
Q |
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| |||| |||| ||| ||||||||||| |
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| T |
24754990 |
ttttttcttggatcttgagaaaatatt |
24755016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 234 - 360
Target Start/End: Original strand, 24760355 - 24760480
Alignment:
| Q |
234 |
tgttcttgaaagtttgttgggttattatttatgtttaaactgagttgtaaggctctaagattatgacatcatgcccgagtttaataatatggtctcgatt |
333 |
Q |
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||||||| |||||||||||| ||||| |||||||||||| |||||| | | |||| | ||| |||||||| ||||||||||||||| ||| | | |
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| T |
24760355 |
tgttctttaaagtttgttggattattgtttatgtttaaattgagttct-atcctctgatattgtgacatcagtattgagtttaataatatgctcttgtct |
24760453 |
T |
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| Q |
334 |
tattttgttggttctagagaaaatatt |
360 |
Q |
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|||||| |||| ||| ||||||||||| |
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| T |
24760454 |
tattttcttggatcttgagaaaatatt |
24760480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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