View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8085_high_24 (Length: 375)

Name: NF8085_high_24
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8085_high_24
NF8085_high_24
[»] chr6 (18 HSPs)
chr6 (17-289)||(4591105-4591379)
chr6 (61-143)||(16734804-16734886)
chr6 (55-143)||(12591826-12591914)
chr6 (61-143)||(11936786-11936868)
chr6 (61-143)||(15361714-15361796)
chr6 (50-139)||(9631178-9631267)
chr6 (55-112)||(14669396-14669453)
chr6 (50-143)||(23904371-23904464)
chr6 (56-112)||(15690432-15690488)
chr6 (55-111)||(17719774-17719830)
chr6 (71-143)||(23264515-23264587)
chr6 (50-143)||(29667934-29668029)
chr6 (58-121)||(6684090-6684153)
chr6 (50-160)||(1942557-1942667)
chr6 (50-105)||(6673675-6673730)
chr6 (81-143)||(10935800-10935862)
chr6 (74-143)||(11948766-11948835)
chr6 (75-112)||(30481278-30481315)
[»] chr4 (13 HSPs)
chr4 (50-143)||(4881088-4881181)
chr4 (50-143)||(4904159-4904252)
chr4 (55-143)||(47066053-47066141)
chr4 (50-142)||(24559015-24559107)
chr4 (55-112)||(1685002-1685059)
chr4 (50-143)||(37751009-37751101)
chr4 (55-143)||(53300344-53300432)
chr4 (64-143)||(43600269-43600348)
chr4 (55-112)||(1152037-1152094)
chr4 (71-140)||(48464049-48464118)
chr4 (50-106)||(4923689-4923745)
chr4 (78-148)||(21539285-21539355)
chr4 (66-94)||(37744787-37744815)
[»] chr1 (16 HSPs)
chr1 (45-143)||(18308131-18308229)
chr1 (62-143)||(5911683-5911764)
chr1 (50-139)||(39368663-39368752)
chr1 (55-131)||(37097371-37097447)
chr1 (55-143)||(16222771-16222859)
chr1 (58-143)||(15214323-15214408)
chr1 (50-143)||(12189940-12190033)
chr1 (62-143)||(28636903-28636984)
chr1 (55-112)||(51758746-51758803)
chr1 (62-142)||(897455-897535)
chr1 (83-160)||(3399643-3399720)
chr1 (55-143)||(1843946-1844033)
chr1 (56-112)||(15193913-15193969)
chr1 (50-99)||(17112913-17112962)
chr1 (59-143)||(13208608-13208693)
chr1 (83-143)||(15204615-15204675)
[»] chr7 (13 HSPs)
chr7 (50-139)||(30089723-30089812)
chr7 (50-158)||(26619108-26619214)
chr7 (50-143)||(26608558-26608651)
chr7 (51-143)||(26621110-26621202)
chr7 (61-158)||(4685407-4685504)
chr7 (55-143)||(26224997-26225085)
chr7 (55-143)||(9242503-9242591)
chr7 (55-143)||(26205434-26205522)
chr7 (55-143)||(10022117-10022205)
chr7 (62-143)||(20277379-20277460)
chr7 (55-143)||(16170264-16170352)
chr7 (81-144)||(3374320-3374383)
chr7 (60-143)||(29932368-29932450)
[»] chr5 (25 HSPs)
chr5 (55-143)||(17037536-17037624)
chr5 (50-143)||(31571017-31571114)
chr5 (55-143)||(5079083-5079171)
chr5 (62-158)||(30786267-30786363)
chr5 (55-143)||(31068982-31069069)
chr5 (71-143)||(12042196-12042268)
chr5 (50-143)||(38449992-38450078)
chr5 (53-143)||(9333580-9333670)
chr5 (53-143)||(9354408-9354498)
chr5 (50-121)||(18191890-18191961)
chr5 (55-112)||(23679434-23679491)
chr5 (55-112)||(23855320-23855377)
chr5 (55-143)||(7410817-7410905)
chr5 (62-143)||(19984995-19985076)
chr5 (77-143)||(40402028-40402094)
chr5 (55-100)||(31406413-31406458)
chr5 (82-146)||(10869457-10869521)
chr5 (50-105)||(12004567-12004621)
chr5 (59-105)||(11499955-11500001)
chr5 (59-105)||(11507342-11507388)
chr5 (59-105)||(11514714-11514760)
chr5 (59-105)||(11522115-11522161)
chr5 (59-105)||(11529528-11529574)
chr5 (60-110)||(16411589-16411638)
chr5 (50-103)||(11833300-11833353)
[»] chr2 (13 HSPs)
chr2 (50-158)||(7702417-7702525)
chr2 (55-143)||(30266996-30267084)
chr2 (50-143)||(24479140-24479233)
chr2 (62-143)||(40016591-40016672)
chr2 (61-143)||(31342735-31342817)
chr2 (55-143)||(44920951-44921038)
chr2 (57-143)||(7718180-7718266)
chr2 (50-143)||(11017445-11017538)
chr2 (47-135)||(27151259-27151346)
chr2 (52-143)||(41573383-41573474)
chr2 (57-143)||(15513662-15513748)
chr2 (47-143)||(22966508-22966606)
chr2 (57-101)||(30553830-30553874)
[»] chr8 (21 HSPs)
chr8 (53-143)||(14997612-14997702)
chr8 (63-143)||(29345432-29345512)
chr8 (61-143)||(25638806-25638888)
chr8 (61-143)||(28249094-28249176)
chr8 (55-112)||(5528736-5528793)
chr8 (59-143)||(6801849-6801933)
chr8 (55-143)||(17634490-17634578)
chr8 (53-157)||(31347340-31347444)
chr8 (64-143)||(45356131-45356210)
chr8 (50-143)||(5650964-5651057)
chr8 (55-112)||(19369960-19370017)
chr8 (55-112)||(19448441-19448498)
chr8 (55-112)||(19532578-19532635)
chr8 (59-143)||(6403590-6403674)
chr8 (55-143)||(25637637-25637725)
chr8 (53-143)||(29553620-29553710)
chr8 (50-112)||(7292822-7292883)
chr8 (55-112)||(18766910-18766967)
chr8 (50-158)||(5000667-5000775)
chr8 (47-105)||(29118587-29118644)
chr8 (95-143)||(6223434-6223482)
[»] chr3 (15 HSPs)
chr3 (55-143)||(1627966-1628054)
chr3 (50-158)||(5498466-5498574)
chr3 (55-143)||(13845985-13846073)
chr3 (63-143)||(26707860-26707940)
chr3 (64-158)||(2550168-2550262)
chr3 (61-143)||(7407773-7407855)
chr3 (50-143)||(9633461-9633554)
chr3 (66-143)||(16457350-16457427)
chr3 (50-133)||(27259474-27259557)
chr3 (61-143)||(1654575-1654657)
chr3 (67-143)||(36035294-36035370)
chr3 (50-108)||(36035460-36035518)
chr3 (59-160)||(1613215-1613316)
chr3 (67-140)||(2943236-2943309)
chr3 (50-133)||(36035007-36035090)
[»] scaffold0576 (1 HSPs)
scaffold0576 (61-143)||(6698-6780)
[»] scaffold0684 (1 HSPs)
scaffold0684 (55-112)||(797-854)
[»] scaffold0069 (1 HSPs)
scaffold0069 (55-112)||(40748-40805)
[»] scaffold1005 (1 HSPs)
scaffold1005 (59-105)||(645-691)


Alignment Details
Target: chr6 (Bit Score: 179; Significance: 2e-96; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 17 - 289
Target Start/End: Original strand, 4591105 - 4591379
Alignment:
Q  17 acataatggacatctatccttcaaataaaaaatataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatca 116  Q
    |||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||||||||||| |||||||||||    
T  4591105 acataatggatatctatccttcaaataaaaaatataattaacatttagtaacatttgaaaattattactaaatcaagaaaaatgttaccgattaaaatca 4591204  T
Q  117 gtaacctttgtacaattgttaggtaaatcctttattactaaatacattaataatggcataatacactttatatagtgatcaaggtcgctaatttcctcaa 216  Q
     |||||||||||||||||||||||| |  || ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  4591205 ataacctttgtacaattgttaggtatagtctgtattactaaatacattaataatggcataatacactttatatagtgatcaaggttgctaatttcctcaa 4591304  T
Q  217 c--aacnnnnnnngtgtcactaatattagcaaccgacaactaatcataattaacttataactatgttaatctttc 289  Q
    |  ||        | |||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||    
T  4591305 caaaaaaaataaagggtcactaatattagcaaccgacaactaatcataactaacttatagctatcttaatctttc 4591379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 16734804 - 16734886
Alignment:
Q  61 ttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||| | || ||| |||| ||||||||||||||||    
T  16734804 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacatttgaacaattgttaggtaaa 16734886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 12591826 - 12591914
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||| | ||||||  | | ||||||||||||||||    
T  12591826 tgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacgctcgaacaattgttaggtaaa 12591914  T

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Target: chr6; HSP #4
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 11936868 - 11936786
Alignment:
Q  61 ttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||| | || |||  ||| ||||||||||| ||||    
T  11936868 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaa 11936786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 15361714 - 15361796
Alignment:
Q  61 ttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||||||| |||||||| ||||||||||||||||||||||| |||||| | || |||  ||| ||||||||||||||||    
T  15361714 ttagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaa 15361796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 9631267 - 9631178
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttagg 139  Q
    |||||||| ||||||||||||||||||| | ||||||||||||||| || |||||| | |||| | |||||| |||| ||||||||||||    
T  9631267 ataattgagatttagtaacacttgaaaactattactaaatcaagaagaacgttactaagtaaatttagtaacatttgaacaattgttagg 9631178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 14669453 - 14669396
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaa 112  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||    
T  14669453 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaa 14669396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 23904464 - 23904371
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||| || ||||||||||||||||||| |||||||| |||||||| |||||| | | || | |||||| |||| ||||||||||||||||    
T  23904464 ataattgagatctagtaacacttgaaaattgctactaaatgaagaaaaaagttactaaatcaatttagtaacatttgaacaattgttaggtaaa 23904371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 15690432 - 15690488
Alignment:
Q  56 gacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaa 112  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||    
T  15690432 gacatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaattaaa 15690488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 111
Target Start/End: Complemental strand, 17719830 - 17719774
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaa 111  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||    
T  17719830 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaa 17719774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 23264587 - 23264515
Alignment:
Q  71 ttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||||||||||||||||||| ||||||| |||||| | |||||| || | ||||||||||||||||    
T  23264587 ttgaaaattgttactaaatcaagaaaattgttactaattaaatttagtaacattcgaacaattgttaggtaaa 23264515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 29668029 - 29667934
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaa--gaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||| || | |||||| ||||||||||| || |||||||  ||||||||||||| |||||| | |||||| |||| ||||||||||||||||    
T  29668029 ataattgagatcttgtaacaattgaaaattgtaacgaaatcaaaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaa 29667934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 58 - 121
Target Start/End: Original strand, 6684090 - 6684153
Alignment:
Q  58 catttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaac 121  Q
    ||||||||||||||| |||||||| ||| ||||||||||||||||||| |||||| | ||||||    
T  6684090 catttagtaacacttaaaaattgtaacttaatcaagaaaaatgttactaattaaatttagtaac 6684153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 160
Target Start/End: Original strand, 1942557 - 1942667
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaatccttt 149  Q
    |||||| | |||| |||||| |||| |||||| ||||||||||||||||| |||||||| ||| | | |||| ||||  |||||| |||||||| |||||    
T  1942557 ataattaagatttggtaacatttgataattgtaactaaatcaagaaaaatattactgataaaatttaataacatttgagcaattgctaggtaaaaccttt 1942656  T
Q  150 attactaaata 160  Q
     ||| ||||||    
T  1942657 gttattaaata 1942667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 6673730 - 6673675
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttact 105  Q
    |||||| | ||||||||||| ||||||| ||| |||||||||||||||||||||||    
T  6673730 ataattaagatttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttact 6673675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 81 - 143
Target Start/End: Complemental strand, 10935862 - 10935800
Alignment:
Q  81 ttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||| ||||||||||||| |||| |  ||||||| |||| ||||||||||||||||    
T  10935862 ttactaaatcatgaaaaatgttactaattatatccagtaacatttgaacaattgttaggtaaa 10935800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 74 - 143
Target Start/End: Complemental strand, 11948835 - 11948766
Alignment:
Q  74 aaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||| ||||||||||||||||||||||| |||||| | || |||  ||| ||||||||||| ||||    
T  11948835 aaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaa 11948766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 75 - 112
Target Start/End: Complemental strand, 30481315 - 30481278
Alignment:
Q  75 aaattgttactaaatcaagaaaaatgttactgattaaa 112  Q
    |||||||||||||||||||||||||||| || ||||||    
T  30481315 aaattgttactaaatcaagaaaaatgttgctaattaaa 30481278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 4e-29; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 4881181 - 4881088
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||  |||||| ||||||||||||||    
T  4881181 ataattgacatccagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaatttagtaatatttgtataattgttaggtaaa 4881088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 4904252 - 4904159
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||| ||||  |||||||||| |||||||||||||||||| |||||||||||||||||||| | |||||| |||||||||||||||||||||    
T  4904252 ataattaacatccagtaacacttaaaaattgttactaaatcatgaaaaatgttactgattaaatttagtaacatttgtacaattgttaggtaaa 4904159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 47066141 - 47066053
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||| | ||||||   || ||||||||||||||||    
T  47066141 tgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggtaaa 47066053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 50 - 142
Target Start/End: Complemental strand, 24559107 - 24559015
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaa 142  Q
    |||||||| ||||||||||| || |||| ||| ||||||||||||||||||||||| |||||| | |||||| |||| || ||||||||||||    
T  24559107 ataattgagatttagtaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacgattgttaggtaa 24559015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 1685059 - 1685002
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaa 112  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||    
T  1685059 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaa 1685002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 37751101 - 37751009
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||||||  |||||||  |||||||||| |||||||||| |||||||||||| ||||||||||||||| ||||  |||||||||| ||||    
T  37751101 ataattgacatccagtaacatatgaaaattgtcactaaatcaa-aaaaatgttactaattaaaatcagtaacatttgcgcaattgttagataaa 37751009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 53300344 - 53300432
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||||||||||||||||||| | ||||||||||||||||||| | |||||| | ||||||   |  ||||||||||||||||    
T  53300344 tgacatttagtaacacttgaaaattgtaattaaatcaagaaaaatgttagtaattaaatttagtaacacctaaacaattgttaggtaaa 53300432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 64 - 143
Target Start/End: Original strand, 43600269 - 43600348
Alignment:
Q  64 gtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||| | || ||   ||| ||||||||||||||||    
T  43600269 gtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaaaacttgaacaattgttaggtaaa 43600348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 1152037 - 1152094
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaa 112  Q
    |||||||||| |||||||||||||||| ||||||| ||||||||||||||| ||||||    
T  1152037 tgacatttagcaacacttgaaaattgtaactaaattaagaaaaatgttactaattaaa 1152094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 71 - 140
Target Start/End: Original strand, 48464049 - 48464118
Alignment:
Q  71 ttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggt 140  Q
    ||||||||||||||||||| || |||||||||||| |||||| | |||||| |||| |||||||||||||    
T  48464049 ttgaaaattgttactaaataaataaaaatgttactaattaaatttagtaacatttgaacaattgttaggt 48464118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 106
Target Start/End: Complemental strand, 4923745 - 4923689
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactg 106  Q
    |||||| ||||  |||||||||| |||||||||||||||||||||||||||||||||    
T  4923745 ataattaacatccagtaacacttaaaaattgttactaaatcaagaaaaatgttactg 4923689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 148
Target Start/End: Complemental strand, 21539355 - 21539285
Alignment:
Q  78 ttgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaatcctt 148  Q
    |||| ||||||||||| |||||||||||||||||| | |||||| |||  ||||||||||| ||| |||||    
T  21539355 ttgtaactaaatcaaggaaaatgttactgattaaatttagtaacatttaaacaattgttagataagtcctt 21539285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 66 - 94
Target Start/End: Complemental strand, 37744815 - 37744787
Alignment:
Q  66 aacacttgaaaattgttactaaatcaaga 94  Q
    |||||||||||||||||||||||||||||    
T  37744815 aacacttgaaaattgttactaaatcaaga 37744787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 3e-27; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 18308131 - 18308229
Alignment:
Q  45 aaaatataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| ||||| ||| | |||| ||| |||||||||||||||||    
T  18308131 aaaacataattgacatctagtaacatttgaaaattgttactaaatcaagaaaaatgttacagattacaattattaacatttctacaattgttaggtaaa 18308229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 5911764 - 5911683
Alignment:
Q  62 tagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||||||||||||| | |||||||||||||||||||||||||||||| | ||||||  ||| ||||||||||||||||    
T  5911764 tagtaacacttgaaaattttaactaaatcaagaaaaatgttactgattaaatttagtaacacttgaacaattgttaggtaaa 5911683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 39368752 - 39368663
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttagg 139  Q
    ||||||||||| ||||||| | |||||| ||||||||||||||||||||||||||| |||||||| ||| || ||| |||||||||||||    
T  39368752 ataattgacatctagtaacccatgaaaaatgttactaaatcaagaaaaatgttactaattaaaattagtcacatttatacaattgttagg 39368663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 131
Target Start/End: Complemental strand, 37097447 - 37097371
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaa 131  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| | |||||| |||| ||||    
T  37097447 tgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactgataaaatttagtaacatttgaacaa 37097371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 16222771 - 16222859
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||| || ||| | ||||||  ||| | ||||||||||||||    
T  16222771 tgacatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaataaaatttagtaacacttgaataattgttaggtaaa 16222859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 58 - 143
Target Start/End: Original strand, 15214323 - 15214408
Alignment:
Q  58 catttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||||||||||||||||||  ||||||||||||||||| ||||| |||||| | |||||  |||| ||||||||| ||||||    
T  15214323 catttagtaacacttgaaaattgcaactaaatcaagaaaaattttactaattaaatttagtaatatttgaacaattgttgggtaaa 15214408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 12189940 - 12190033
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||| | |||| |||| || |||| ||| ||||||||||||||||| ||||| |||||| | |||||| |||| ||||||||||||||||    
T  12189940 ataattgagaattagaaacaattaaaaaatgtaactaaatcaagaaaaatattactaattaaatttagtaacatttgaacaattgttaggtaaa 12190033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 28636903 - 28636984
Alignment:
Q  62 tagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||| || |||||||| ||||||||||||||||||||||| ||| || | |||||| |||| | ||||||||||||||    
T  28636903 tagtaacatttaaaaattgtaactaaatcaagaaaaatgttactaattcaatttagtaacatttgaataattgttaggtaaa 28636984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 51758746 - 51758803
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaa 112  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||| | ||||||    
T  51758746 tgacatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttagtaattaaa 51758803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 62 - 142
Target Start/End: Original strand, 897455 - 897535
Alignment:
Q  62 tagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaa 142  Q
    |||| ||| ||||||||||||||||||| |||||||||||| || |||||| | ||||||  ||| |||||||||||||||    
T  897455 tagttacagttgaaaattgttactaaatgaagaaaaatgttcctaattaaatttagtaacaattgaacaattgttaggtaa 897535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 83 - 160
Target Start/End: Original strand, 3399643 - 3399720
Alignment:
Q  83 actaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaatcctttattactaaata 160  Q
    ||||||||| ||||||||||||| |||||| | |||||| |||| ||||||||||||||||  || | ||||||||||    
T  3399643 actaaatcatgaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaaatctatgttactaaata 3399720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 1843946 - 1844033
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||| ||||||||||||| |||||||| |||  |  ||||||||||||||||||| || | |||||| |||| ||||||||||||||||    
T  1843946 tgacctttagtaacactt-aaaattgtaactggaataagaaaaatgttactgattgaatttagtaacatttgaacaattgttaggtaaa 1844033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 56 - 112
Target Start/End: Original strand, 15193913 - 15193969
Alignment:
Q  56 gacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaa 112  Q
    ||||||||||||||||||||||| |  || |||||||||||||||||||| ||||||    
T  15193913 gacatttagtaacacttgaaaatagcaacgaaatcaagaaaaatgttactaattaaa 15193969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 50 - 99
Target Start/End: Original strand, 17112913 - 17112962
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaat 99  Q
    |||||||| || |||||| | |||||||||||||||||||||||||||||    
T  17112913 ataattgaaatctagtaataattgaaaattgttactaaatcaagaaaaat 17112962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 13208608 - 13208693
Alignment:
Q  59 atttagtaacactt-gaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||| |||| ||||||||| | ||||| ||||||||||||||| |||||| | |||| |  ||| || |||||||||||||    
T  13208608 atttagtaatactttgaaaattgtaattaaattaagaaaaatgttactaattaaatttagtaccacttgaaccattgttaggtaaa 13208693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 83 - 143
Target Start/End: Original strand, 15204615 - 15204675
Alignment:
Q  83 actaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||||||||||||||| || | |||| | ||||||  ||| ||||||||||||||||    
T  15204615 actaaatcaagaaaaatgttgctaactaaatttagtaacacttgaacaattgttaggtaaa 15204675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 50 - 139
Target Start/End: Original strand, 30089723 - 30089812
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttagg 139  Q
    ||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||| | | |||||| |||| ||||||||||||    
T  30089723 ataattgacatctagtaacacttgaaaactgttactaaatcaagaaaaatgttactgattatatttagtaacatttgaacaattgttagg 30089812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 50 - 158
Target Start/End: Complemental strand, 26619214 - 26619108
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaatccttt 149  Q
    ||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||| | | |||| |||| ||||||| |||||||||||| |    
T  26619214 ataattgacatctagtaacacttgaaa-ttgttactaaatcaagaaaaatgttactgattaaatttattaacatttgaacaattg-taggtaaatcctat 26619117  T
Q  150 attactaaa 158  Q
     ||||||||    
T  26619116 gttactaaa 26619108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 26608651 - 26608558
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||| |||||||| |||||||||||||  ||||||||||||||||||||||||||| | |||||| |||| ||||||||||| ||||    
T  26608651 ataattgacatctagtaacatttgaaaattgttatgaaatcaagaaaaatgttactgattaaatttagtaacatttgaacaattgttagataaa 26608558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 51 - 143
Target Start/End: Complemental strand, 26621202 - 26621110
Alignment:
Q  51 taattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||| ||||| |||||||||||||||||||||||||||| |||||||||||||||||||||| | || ||| |||  ||||||||||| ||||    
T  26621202 taatggacatctagtaacacttgaaaattgttactaaattaagaaaaatgttactgattaaatttagcaacatttaaacaattgttagataaa 26621110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 61 - 158
Target Start/End: Complemental strand, 4685504 - 4685407
Alignment:
Q  61 ttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaatcctttattactaaa 158  Q
    ||||||||||||||||||||| ||||||||||||||||||||| | |||||| | || |||  ||| |||||||||||||||| ||  ||||||||||    
T  4685504 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagcaacacttgaacaattgttaggtaaagcccgtattactaaa 4685407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 26225085 - 26224997
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||| ||||||||||||||||| |||||||||||||||||| |||| |||||| | ||||||  ||| |||||| |||||||||    
T  26225085 tgacatttaataacacttgaaaattgtaactaaatcaagaaaaatgatactaattaaatttagtaacacttgaacaattattaggtaaa 26224997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 9242591 - 9242503
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||||| |||||||||||||||| ||||||||||||||| ||||||| |||||| |  |||||  ||| ||||||||||| ||||    
T  9242591 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaattgttactaattaaattttgtaacacttgaacaattgttagataaa 9242503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 26205522 - 26205434
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||| ||||||||||||| | ||||||||||||||||||||||| |||||| | ||||||  ||| | ||||| ||||||||    
T  26205522 tgacatttagtgacacttgaaaattataactaaatcaagaaaaatgttactaattaaatttagtaacacttgaaaaattggtaggtaaa 26205434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 10022117 - 10022205
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||||||| ||||||||||| |||||||||  |||||||||||| |||||  | ||||||   || ||||||||||||||||    
T  10022117 tgacatttagtaacaattgaaaattgtaactaaatcagaaaaaatgttactaattaagtttagtaacacatgaacaattgttaggtaaa 10022205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 20277460 - 20277379
Alignment:
Q  62 tagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||||| ||||||||| |||||||||| |||||| ||| | |||||| | |||||| |||  ||||||||||||||||    
T  20277460 tagtaacactcgaaaattgtaactaaatcaaaaaaaatattattaattaaatttagtaacatttaaacaattgttaggtaaa 20277379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 16170264 - 16170352
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||||| |||||||||||||||| || ||||||  |||| ||||||| |||||| | ||||||  ||  ||||||||||||||||    
T  16170264 tgacatttagcaacacttgaaaattgtaaccaaatcacaaaaagtgttactaattaaatttagtaacacttaaacaattgttaggtaaa 16170352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 81 - 144
Target Start/End: Original strand, 3374320 - 3374383
Alignment:
Q  81 ttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaat 144  Q
    |||| |||||||||||||||||| |||||||| | |||||| |||| |||||||| | ||||||    
T  3374320 ttaccaaatcaagaaaaatgttattgattaaattaagtaacatttgaacaattgtcaagtaaat 3374383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 60 - 143
Target Start/End: Complemental strand, 29932450 - 29932368
Alignment:
Q  60 tttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||||| ||||||| | ||||||||||  ||||||||||| |||||| ||  | |||| |||| ||||||||||||||||    
T  29932450 tttagtaacatttgaaaaatattactaaatcgcgaaaaatgtta-tgattataactaataacatttggacaattgttaggtaaa 29932368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 61; Significance: 4e-26; HSPs: 25)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 17037536 - 17037624
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||||||||||||||||||| || ||||||||||||||||||||||| |||||| | |||||| |||| ||||||||||||||||    
T  17037536 tgacatttagtaacacttgaaaatcgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaa 17037624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 31571017 - 31571114
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaac----ctttgtacaattgttaggtaaa 143  Q
    ||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||||     | |||||||||||||||||||    
T  31571017 ataattgacatctagtaacacttgaaaattgttattaaaacaagaaaaatgttactgattaaaattagtaacatatatatgtacaattgttaggtaaa 31571114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 5079171 - 5079083
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||| |||||| | || |||  ||| ||||||||||||||||    
T  5079171 tgacaattagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaa 5079083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 62 - 158
Target Start/End: Original strand, 30786267 - 30786363
Alignment:
Q  62 tagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaatcctttattactaaa 158  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||||| || | |||||| |||| | ||||||||||||||| | || ||||||||    
T  30786267 tagtaacacttgaaaattgtaacttaatcaagaaaaatgttactgattcaatttagtaacatttgaataattgttaggtaaatgccttgttactaaa 30786363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 31069069 - 31068982
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||| | ||||| | ||| ||||||||||||||||    
T  31069069 tgacatttagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaa-cattgaacaattgttaggtaaa 31068982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 71 - 143
Target Start/End: Complemental strand, 12042268 - 12042196
Alignment:
Q  71 ttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||| ||||||||||||||||||||||||||| || | |||||| |||| ||||||||||||||||    
T  12042268 ttgaaaattgtaactaaatcaagaaaaatgttactgattcaatttagtaacatttgaacaattgttaggtaaa 12042196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 38450078 - 38449992
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||| ||||||||| ||||||||||||| |||||||||||||||       |||||||||||||| |||||| ||||||||||||||    
T  38450078 ataattgacatctagtaacacatgaaaattgttaccaaatcaagaaaaatg-------ttaaaatcagtaacatttgtataattgttaggtaaa 38449992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 9333670 - 9333580
Alignment:
Q  53 attgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||| |||| |||||| ||||||||||| || |||||||||||||||||||| |||||| | |||||| ||||  |||||||||||||||    
T  9333670 attgagattttgtaacaattgaaaattgtaacaaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaaa 9333580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 53 - 143
Target Start/End: Complemental strand, 9354498 - 9354408
Alignment:
Q  53 attgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||| ||||||||||| ||||||||||| ||| ||||||||||||||||||| |||||| | | |||| ||||  |||||||||||||||    
T  9354498 attgagatttagtaacaattgaaaattgtaactgaatcaagaaaaatgttactaattaaatttaataacatttgagcaattgttaggtaaa 9354408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 121
Target Start/End: Complemental strand, 18191961 - 18191890
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaac 121  Q
    |||||||| ||||||||||| ||||||||||| ||||||| ||||||||||||||| |||||| | ||||||    
T  18191961 ataattgagatttagtaacaattgaaaattgtaactaaattaagaaaaatgttactaattaaatttagtaac 18191890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 23679434 - 23679491
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaa 112  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||| | ||||||    
T  23679434 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttattaattaaa 23679491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 23855377 - 23855320
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaa 112  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||| | ||||||    
T  23855377 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttattaattaaa 23855320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 7410817 - 7410905
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||| ||||||||| || |||||||| |||||||||| |||||||||||| |||||| | || |||  ||| ||||||||||||||||    
T  7410817 tgacaattagtaacatttcaaaattgtaactaaatcaaaaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaa 7410905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 19984995 - 19985076
Alignment:
Q  62 tagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||||| |||||| || ||||||||||| ||||||||||| |||| | | |||||| |||| | ||||||||||||||    
T  19984995 tagtaacactcgaaaatggtaactaaatcaaggaaaatgttactaattagatttagtaacatttgaataattgttaggtaaa 19985076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 143
Target Start/End: Complemental strand, 40402094 - 40402028
Alignment:
Q  77 attgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||| ||||||| ||||||||||||||| |||||| | ||| || |||| ||||||||||||||||    
T  40402094 attgtgactaaataaagaaaaatgttactaattaaatttagttacgtttgaacaattgttaggtaaa 40402028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 55 - 100
Target Start/End: Complemental strand, 31406458 - 31406413
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatg 100  Q
    |||||||||| |||| ||||||||||| ||||||||||||||||||    
T  31406458 tgacatttagcaacatttgaaaattgtaactaaatcaagaaaaatg 31406413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 146
Target Start/End: Original strand, 10869457 - 10869521
Alignment:
Q  82 tactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaatcc 146  Q
    |||||||||| ||||| ||||||| |||||| | |||||| |||| |||||||||||||| ||||    
T  10869457 tactaaatcatgaaaattgttactaattaaatttagtaacatttgaacaattgttaggtatatcc 10869521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 50 - 105
Target Start/End: Complemental strand, 12004621 - 12004567
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttact 105  Q
    |||||||| ||||||||||| |||||| || | |||||||||||||||||||||||    
T  12004621 ataattgaaatttagtaacaattgaaa-ttctaactaaatcaagaaaaatgttact 12004567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 11499955 - 11500001
Alignment:
Q  59 atttagtaacacttgaaaattgttactaaatcaagaaaaatgttact 105  Q
    |||||||||||||| |||||||| ||||||| || ||||||||||||    
T  11499955 atttagtaacacttaaaaattgtaactaaataaaaaaaaatgttact 11500001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 11507342 - 11507388
Alignment:
Q  59 atttagtaacacttgaaaattgttactaaatcaagaaaaatgttact 105  Q
    |||||||||||||| |||||||| ||||||| || ||||||||||||    
T  11507342 atttagtaacacttaaaaattgtaactaaataaaaaaaaatgttact 11507388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 11514714 - 11514760
Alignment:
Q  59 atttagtaacacttgaaaattgttactaaatcaagaaaaatgttact 105  Q
    |||||||||||||| |||||||| ||||||| || ||||||||||||    
T  11514714 atttagtaacacttaaaaattgtaactaaataaaaaaaaatgttact 11514760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 11522115 - 11522161
Alignment:
Q  59 atttagtaacacttgaaaattgttactaaatcaagaaaaatgttact 105  Q
    |||||||||||||| |||||||| ||||||| || ||||||||||||    
T  11522115 atttagtaacacttaaaaattgtaactaaataaaaaaaaatgttact 11522161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 11529528 - 11529574
Alignment:
Q  59 atttagtaacacttgaaaattgttactaaatcaagaaaaatgttact 105  Q
    |||||||||||||| |||||||| ||||||| || ||||||||||||    
T  11529528 atttagtaacacttaaaaattgtaactaaataaaaaaaaatgttact 11529574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 60 - 110
Target Start/End: Original strand, 16411589 - 16411638
Alignment:
Q  60 tttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgatta 110  Q
    |||||||||| ||||||||  ||||||||||| ||||||||||||||||||    
T  16411589 tttagtaacatttgaaaata-ttactaaatcacgaaaaatgttactgatta 16411638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 50 - 103
Target Start/End: Complemental strand, 11833353 - 11833300
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgtta 103  Q
    |||||||| ||||||||||| |||| || ||| ||||||||| |||||||||||    
T  11833353 ataattgagatttagtaacatttgacaaatgtaactaaatcatgaaaaatgtta 11833300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 7702417 - 7702525
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaatccttt 149  Q
    ||||||||||| ||||||||| |||||||| ||||||||| || |||||||||| | |||||||| |||||| ||||||||||||||||||||| ||  |    
T  7702417 ataattgacatctagtaacacatgaaaattattactaaattaaaaaaaatgttattaattaaaattagtaacatttgtacaattgttaggtaaagcccat 7702516  T
Q  150 attactaaa 158  Q
    |||||||||    
T  7702517 attactaaa 7702525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 30266996 - 30267084
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| | |||||| | ||||||   || ||||||||||||||||    
T  30266996 tgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttagtaattaaatttagtaacacctgaacaattgttaggtaaa 30267084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 24479140 - 24479233
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||| || |||||||||||||||||| |||||||||||||| || ||||||| |||||| | |||||| |||| |||||| |||||||||    
T  24479140 ataattgagatatagtaacacttgaaaattattactaaatcaagataactgttactaattaaatttagtaacatttgaacaattcttaggtaaa 24479233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 62 - 143
Target Start/End: Original strand, 40016591 - 40016672
Alignment:
Q  62 tagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||||||||||||| ||| ||||||||| |||||||||||||||||| | |||||| |||| | ||||||||||||||    
T  40016591 tagtaacacttgaaaattattattaaatcaagtaaaatgttactgattaaatttagtaacatttgaataattgttaggtaaa 40016672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 31342817 - 31342735
Alignment:
Q  61 ttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||| | || |||  ||| ||||||||||| ||||    
T  31342817 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttagataaa 31342735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 44920951 - 44921038
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||||||||||||||||||| |||||||||| |||||||||||| |||||| | ||||||   |  ||||||||||||||||    
T  44920951 tgacatttagtaacacttgaaaattgtaactaaatcaa-aaaaatgttactaattaaatttagtaacacctaaacaattgttaggtaaa 44921038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 57 - 143
Target Start/End: Original strand, 7718180 - 7718266
Alignment:
Q  57 acatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||| ||||||||||||| ||||||||||||||||| ||||| |||||| | ||||||   || ||||||||||| ||||    
T  7718180 acatttagtaatacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacacatgaacaattgttagataaa 7718266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 50 - 143
Target Start/End: Original strand, 11017445 - 11017538
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||| || |||||||| |||||||  |||||||||| ||||||| ||||||| |||||| | |||||| ||||  |||||||||||||||    
T  11017445 ataattgagatctagtaacaattgaaaaccgttactaaataaagaaaattgttactaattaaatttagtaacatttgaccaattgttaggtaaa 11017538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 47 - 135
Target Start/End: Complemental strand, 27151346 - 27151259
Alignment:
Q  47 aatataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgt 135  Q
    |||||||||||||| |||||| | || ||| |||||||||||||||||||||||| ||| |||||||| ||| ||  ||||||||||||    
T  27151346 aatataattgacatctagtaataatttaaa-ttgttactaaatcaagaaaaatgtcactaattaaaattagtgacacttgtacaattgt 27151259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 41573383 - 41573474
Alignment:
Q  52 aattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||| ||||||||||| |  |||| ||| ||||||||||||||||||||||| |||||| | ||||||  ||  ||||||||||||||||    
T  41573383 aattgagatttagtaacattcaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacagttaaacaattgttaggtaaa 41573474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 57 - 143
Target Start/End: Original strand, 15513662 - 15513748
Alignment:
Q  57 acatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||||| || |||||||| | |||||||||||||||||||||  ||||| |  |||||  ||| ||||||||||||||||    
T  15513662 acatttagtaacaattaaaaattgtaagtaaatcaagaaaaatgttactagttaaattttgtaacacttgaacaattgttaggtaaa 15513748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 47 - 143
Target Start/End: Original strand, 22966508 - 22966606
Alignment:
Q  47 aatataattgacatttagtaacacttgaaaattgttactaaatcaaga--aaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||| ||||||||||||||||||| | ||||||||| || |  ||||| ||||| || ||| | ||| || |||  ||||||||||||||||    
T  22966508 aatataattgagatttagtaacacttgaaaactattactaaataaaaaataaaatattactaatgaaatttagttacatttaaacaattgttaggtaaa 22966606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 101
Target Start/End: Original strand, 30553830 - 30553874
Alignment:
Q  57 acatttagtaacacttgaaaattgttactaaatcaagaaaaatgt 101  Q
    |||||||| |||||||||||||||| || | ||||||||||||||    
T  30553830 acatttagcaacacttgaaaattgtaacaacatcaagaaaaatgt 30553874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 14997612 - 14997702
Alignment:
Q  53 attgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||| |||| ||||||||||||| ||||||| |||||||||||||||||| ||||||| |||||| |||||| ||||||||||||||    
T  14997612 attgacatctagtgacacttgaaaattattactaattcaagaaaaatgttactggttaaaattagtaacatttgtagaattgttaggtaaa 14997702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 29345432 - 29345512
Alignment:
Q  63 agtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||| ||||||||| ||||||||||||||||| ||||| |||||| | ||||||||||| ||||||||||||||||    
T  29345432 agtaacactcgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacctttgaacaattgttaggtaaa 29345512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 25638806 - 25638888
Alignment:
Q  61 ttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||| | || |||  ||| ||||||||||||||||    
T  25638806 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaa 25638888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 28249176 - 28249094
Alignment:
Q  61 ttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||||||||||||| ||||||||||||||||||||||| |||||| | || |||  ||| ||||||||||||||||    
T  28249176 ttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaa 28249094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 5528736 - 5528793
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaa 112  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||    
T  5528736 tgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaa 5528793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 59 - 143
Target Start/End: Complemental strand, 6801933 - 6801849
Alignment:
Q  59 atttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||||||||||| | |||||||||||| |||||||||||| |||||| | ||||||  ||| ||||||||||||||||    
T  6801933 atttagtaacacttgaaaactattactaaatcaataaaaatgttactaattaaatttagtaacagttgaacaattgttaggtaaa 6801849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 17634578 - 17634490
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||||| | | ||||  ||| ||||||| ||||||||    
T  17634578 tgacatttagtaacatttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttaataacacttgaacaattgataggtaaa 17634490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 53 - 157
Target Start/End: Original strand, 31347340 - 31347444
Alignment:
Q  53 attgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaatcctttatt 152  Q
    ||||| ||||||||||| ||||||||||| || ||||||||||||||| |||| |||||| | |||||| ||||  |||||||||| |||||||| | ||    
T  31347340 attgaaatttagtaacaattgaaaattgtaaccaaatcaagaaaaatgctactaattaaatttagtaacatttgatcaattgttagataaatcctgtgtt 31347439  T
Q  153 actaa 157  Q
    |||||    
T  31347440 actaa 31347444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 64 - 143
Target Start/End: Complemental strand, 45356210 - 45356131
Alignment:
Q  64 gtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||| | || |||  ||| ||||||||||||||||    
T  45356210 gtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaa 45356131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 5651057 - 5650964
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||  || ||||||||||||||| | ||||||||||||||||||||||||| ||| || | || ||| |||| ||||||||||||||||    
T  5651057 ataattgagtttcagtaacacttgaaaactattactaaatcaagaaaaatgttactaattcaatttagcaacatttgaacaattgttaggtaaa 5650964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 19370017 - 19369960
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaa 112  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||    
T  19370017 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaa 19369960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 19448441 - 19448498
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaa 112  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||    
T  19448441 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaa 19448498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 19532635 - 19532578
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaa 112  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||    
T  19532635 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaa 19532578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 59 - 143
Target Start/End: Original strand, 6403590 - 6403674
Alignment:
Q  59 atttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||| |||||| |||| ||||||| ||||||||||||||| |||||| | |||||| ||||  |||||||||||||||    
T  6403590 atttagtaacaattgaaatttgtaactaaattaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaaa 6403674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 25637637 - 25637725
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||||||||||||||||||| ||||||| ||||||| ||||||| |||||| | || |||  | | ||||||||||||||||    
T  25637637 tgacatttagtaacacttgaaaattgtaactaaattaagaaaactgttactaattaaatttagcaacactcgaacaattgttaggtaaa 25637725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 53 - 143
Target Start/End: Original strand, 29553620 - 29553710
Alignment:
Q  53 attgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||| ||||||||||| ||||||||||| || |||||||||||||||||||| |||||| | || ||| ||||  |||||||||| ||||    
T  29553620 attgagatttagtaacaattgaaaattgtaaccaaatcaagaaaaatgttactaattaaatttagcaacatttgagcaattgttagttaaa 29553710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 112
Target Start/End: Original strand, 7292822 - 7292883
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaa 112  Q
    |||||||||||||| ||||||||||||||||||||| ||||| | ||||||||||| ||||||    
T  7292822 ataattgacatttaataacacttgaaaattgttactgaatcatg-aaaatgttactaattaaa 7292883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 112
Target Start/End: Original strand, 18766910 - 18766967
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaa 112  Q
    |||||||||| |||||||||||||||| ||||||||||||||||| ||| | ||||||    
T  18766910 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatattattaattaaa 18766967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 5000667 - 5000775
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaatccttt 149  Q
    |||||||| || |||| ||| |||||||||||||||| ||||  |||| ||||||| |||||| | |||||| ||||  |||| ||||||| || ||| |    
T  5000667 ataattgagatctagttacaattgaaaattgttactacatcatcaaaattgttactaattaaatttagtaacatttgagcaatagttaggtgaaacctgt 5000766  T
Q  150 attactaaa 158  Q
     ||||||||    
T  5000767 gttactaaa 5000775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 47 - 105
Target Start/End: Complemental strand, 29118644 - 29118587
Alignment:
Q  47 aatataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttact 105  Q
    ||||||||||| || ||||||||||| ||||||||| ||||| |||||| |||||||||    
T  29118644 aatataattgagatctagtaacactt-aaaattgttgctaaaccaagaagaatgttact 29118587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 95 - 143
Target Start/End: Original strand, 6223434 - 6223482
Alignment:
Q  95 aaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||| ||||||||||||| | |||||| |||||| ||||||||||||||    
T  6223434 aaaacgttactgattaaatttagtaacatttgtaaaattgttaggtaaa 6223482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 53; Significance: 2e-21; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 143
Target Start/End: Complemental strand, 1628054 - 1627966
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||||| | ||||||  ||| |||||||||| |||||    
T  1628054 tgacatttagtaacacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagtaacacttgaacaattgttaagtaaa 1627966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 50 - 158
Target Start/End: Original strand, 5498466 - 5498574
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaatccttt 149  Q
    |||||||| ||||||||||| || |||| ||| ||||||||||||||||||||||| |||||| | |||||| | || |||||||||||||||| ||| |    
T  5498466 ataattgagatttagtaacaattaaaaaatgtaactaaatcaagaaaaatgttactaattaaatttagtaacttctgaacaattgttaggtaaaacctat 5498565  T
Q  150 attactaaa 158  Q
     ||||||||    
T  5498566 gttactaaa 5498574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 13845985 - 13846073
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||||| |||||||||||||||| ||||||||||||||||||||||| |||||| | || |||  ||| ||||||||||||||||    
T  13845985 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaa 13846073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 63 - 143
Target Start/End: Original strand, 26707860 - 26707940
Alignment:
Q  63 agtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||| |||||||| |||||||||||||||||||||||||| |||||| | |||||| |||| ||||||||||||||||    
T  26707860 agtaacatttgaaaatggttactaaatcaagaaaaatgttactaattaaatttagtaacatttgaacaattgttaggtaaa 26707940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 64 - 158
Target Start/End: Original strand, 2550168 - 2550262
Alignment:
Q  64 gtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaatcctttattactaaa 158  Q
    |||||||||||||||||| ||||||||||||||||||||||| |||||| | || |||  ||| |||||||||||||||| ||| | ||||||||    
T  2550168 gtaacacttgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaagcctgtgttactaaa 2550262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 61 - 143
Target Start/End: Complemental strand, 7407855 - 7407773
Alignment:
Q  61 ttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||| |||||| | || |||  ||| ||||||||||||||||    
T  7407855 ttagtaacacttgaaaattgtaactaaatcaagaaaaatattactaattaaatttagcaacacttgaacaattgttaggtaaa 7407773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 9633554 - 9633461
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||| ||||||||||||||||||| | |||||||||| | |||||||||||| |||||| | ||| || |||  ||||||||||||||||    
T  9633554 ataattgagatttagtaacacttgaaaactattactaaatcgaaaaaaatgttactaattaaatttagttacatttaaacaattgttaggtaaa 9633461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 66 - 143
Target Start/End: Complemental strand, 16457427 - 16457350
Alignment:
Q  66 aacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||| ||||||||||| ||||||||||||||||||||||| |||||| | |||||| ||||  |||||||||||||||    
T  16457427 aacaattgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagtaacatttgagcaattgttaggtaaa 16457350  T

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Target: chr3; HSP #9
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 50 - 133
Target Start/End: Complemental strand, 27259557 - 27259474
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaatt 133  Q
    |||||||| ||||||||||| ||||||| | ||||||||||||| ||||||||||| |||||| | |||||| |||| ||||||    
T  27259557 ataattgagatttagtaacaattgaaaactattactaaatcaagcaaaatgttactaattaaatttagtaacatttgaacaatt 27259474  T

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Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 1654575 - 1654657
Alignment:
Q  61 ttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    ||||||||| ||||||||||| ||||||||||||||||||||||| |||||| | || |||  ||| |||||||||| |||||    
T  1654575 ttagtaacaattgaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaagtaaa 1654657  T

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Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 67 - 143
Target Start/End: Original strand, 36035294 - 36035370
Alignment:
Q  67 acacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||| ||||||| ||||||||||||||||||  |||| |||||| | ||||||  ||||||||||||||||||||    
T  36035294 acacttcaaaattggtactaaatcaagaaaaataatactaattaaatttagtaacaattgtacaattgttaggtaaa 36035370  T

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Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 50 - 108
Target Start/End: Original strand, 36035460 - 36035518
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgat 108  Q
    ||||||||||| ||||||||||| ||||||||||||| ||||||||||||  |||||||    
T  36035460 ataattgacatctagtaacacttcaaaattgttactatatcaagaaaaataatactgat 36035518  T

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Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 59 - 160
Target Start/End: Complemental strand, 1613316 - 1613215
Alignment:
Q  59 atttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaatcctttattactaaa 158  Q
    ||||||||||| ||||||| ||| ||||||||||||||||||||||| | |||| | ||||||  |||  ||||| ||||||||| ||  | ||||||||    
T  1613316 atttagtaacagttgaaaaatgtaactaaatcaagaaaaatgttactaaataaatttagtaacagttgaccaatttttaggtaaagcccctgttactaaa 1613217  T
Q  159 ta 160  Q
    ||    
T  1613216 ta 1613215  T

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Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 67 - 140
Target Start/End: Complemental strand, 2943309 - 2943236
Alignment:
Q  67 acacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggt 140  Q
    |||||||||| |||| | ||||||||||||||||||||| |||||| | |||||| || | |||||||||||||    
T  2943309 acacttgaaatttgtaattaaatcaagaaaaatgttactaattaaatttagtaacattcgaacaattgttaggt 2943236  T

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Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 50 - 133
Target Start/End: Original strand, 36035007 - 36035090
Alignment:
Q  50 ataattgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaatt 133  Q
    ||||||||||| || | |||||| ||||||| ||||||||||||||||||  |||| |||||| | ||||||  ||||||||||    
T  36035007 ataattgacatctaatgacacttcaaaattggtactaaatcaagaaaaataatactaattaaatttagtaacaattgtacaatt 36035090  T

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Target: scaffold0576 (Bit Score: 47; Significance: 9e-18; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 61 - 143
Target Start/End: Original strand, 6698 - 6780
Alignment:
Q  61 ttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaaatcagtaacctttgtacaattgttaggtaaa 143  Q
    |||||||||||| |||||||| ||||||||||||||||||||||| |||||| | || |||  ||| ||||||||||||||||    
T  6698 ttagtaacacttaaaaattgtaactaaatcaagaaaaatgttactaattaaatttagcaacacttgaacaattgttaggtaaa 6780  T

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Target: scaffold0684 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 854 - 797
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaa 112  Q
    |||||||||| |||||||||||||||| ||||||||||||||| ||||||| ||||||    
T  854 tgacatttagcaacacttgaaaattgtaactaaatcaagaaaattgttactaattaaa 797  T

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Target: scaffold0069 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 112
Target Start/End: Complemental strand, 40805 - 40748
Alignment:
Q  55 tgacatttagtaacacttgaaaattgttactaaatcaagaaaaatgttactgattaaa 112  Q
    |||||||||| || ||||||||||||| ||||||||||||||| ||||||| ||||||    
T  40805 tgacatttagcaatacttgaaaattgtaactaaatcaagaaaattgttactaattaaa 40748  T

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Target: scaffold1005 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1005
Description:

Target: scaffold1005; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 59 - 105
Target Start/End: Original strand, 645 - 691
Alignment:
Q  59 atttagtaacacttgaaaattgttactaaatcaagaaaaatgttact 105  Q
    |||||||||||||| |||||||| ||||||| || ||||||||||||    
T  645 atttagtaacacttaaaaattgtaactaaataaaaaaaaatgttact 691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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