View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_high_26 (Length: 366)
Name: NF8085_high_26
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_high_26 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 18 - 366
Target Start/End: Complemental strand, 8572961 - 8572613
Alignment:
| Q |
18 |
ccatcactacaactattattgttgctgaagatccatacaggttcttcaactggaacgttacctatggtgacatttatccacttggtgttcgccaacaggt |
117 |
Q |
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| T |
8572961 |
ccatcactacaactattattgttgctgaagatccatacaggttcttcaactggaacgttacctatggtgacatttatccacttggtgttcgccaacaggt |
8572862 |
T |
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| Q |
118 |
atatttatattctcactttcatccttataccttatcggatctgagtcattgtgattaatttgtgacacacatgcagggaatacttatcaatggccaattc |
217 |
Q |
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| T |
8572861 |
atatttatattctcactttcatccttataccttatcggatctgagtcattgtgattaatttgtgacacacatgcagggaatacttatcaatggccaattc |
8572762 |
T |
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| Q |
218 |
ccaggaccagacattcattctgtgacaaatgataatctcattatcaatgtcttcaacagcttggatgaaccttttctcatttcatggttagtacttttca |
317 |
Q |
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| T |
8572761 |
ccaggaccagacattcattctgtgacaaatgataatctcattatcaatgtcttcaacagcttggatgaaccttttctcatttcatggttagtacctttca |
8572662 |
T |
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| Q |
318 |
catttcctatataatttctataccatatgatatgtataaataacaaaaa |
366 |
Q |
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| T |
8572661 |
catttcctatataatttctataccatatgatatgtataaataacaaaaa |
8572613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 3e-27; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 203 - 305
Target Start/End: Complemental strand, 53755855 - 53755753
Alignment:
| Q |
203 |
atcaatggccaattcccaggaccagacattcattctgtgacaaatgataatctcattatcaatgtcttcaacagcttggatgaaccttttctcatttcat |
302 |
Q |
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| T |
53755855 |
atcaatggccaattccctggtccagacattcattctgttacaaacgacaacctcattatcaatgtcttcaacagtttgaatgaaccctttctcatctcat |
53755756 |
T |
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| Q |
303 |
ggt |
305 |
Q |
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| T |
53755755 |
ggt |
53755753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 41 - 108
Target Start/End: Complemental strand, 53756069 - 53756002
Alignment:
| Q |
41 |
gctgaagatccatacaggttcttcaactggaacgttacctatggtgacatttatccacttggtgttcg |
108 |
Q |
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| T |
53756069 |
gctgaagatccctataaattcttcaactggaatgttacttacggtgacatttacccacttggagttcg |
53756002 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 307
Target Start/End: Complemental strand, 17138946 - 17138878
Alignment:
| Q |
239 |
gtgacaaatgataatctcattatcaatgtcttcaacagcttggatgaaccttttctcatttcatggtta |
307 |
Q |
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| T |
17138946 |
gtgactaatgataatttgattatcaatgttttcaacagcttggatgaacctttcctcatttcttggtta |
17138878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 239 - 309
Target Start/End: Original strand, 17345571 - 17345641
Alignment:
| Q |
239 |
gtgacaaatgataatctcattatcaatgtcttcaacagcttggatgaaccttttctcatttcatggttagt |
309 |
Q |
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| T |
17345571 |
gtgactaatgataatttgattatcaatgtttttaatagcttggatgaacctttcctcatttcttggttagt |
17345641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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