View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8085_high_3 (Length: 737)

Name: NF8085_high_3
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8085_high_3
NF8085_high_3
[»] chr2 (1 HSPs)
chr2 (42-737)||(8251360-8252057)


Alignment Details
Target: chr2 (Bit Score: 635; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 635; E-Value: 0
Query Start/End: Original strand, 42 - 737
Target Start/End: Original strand, 8251360 - 8252057
Alignment:
Q  42 cagtattaatcttaagagattaggagaactataaatttctagtttcaaatgactcataaatcgttgtaagtaattttataataatagtaagcatagaatc 141  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8251360 cagtattaatcttaagagattaggagaactataaatttctagtttcaaatgactcataaatcgttgtaagtaattttataataatagtaagcatagaatc 8251459  T
Q  142 catcctcaatgagagttgaaacttgaaaatctatctgtcagcaaaatccggctacaaatctcaatgttatttatagaagtaatagaaacacaatggcaac 241  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8251460 catcctcaatgagagttgaaacttgaaaatctatctgtcagcaaaatccggctacaaatctcaatgttatttatagaagtaatagaaacacaatggcaac 8251559  T
Q  242 atccaatgaaaatggcttttactcggtaagcacttatgtcatagagggatggtacacaaatgtagctcaaaatgagcttttactacagcagagttgaaga 341  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8251560 atccaatgaaaatggcttttactcggtaagcacttatgtcatagagggatggtacacaaatgtagctcaaaatgagcttttactacagcagagttgaaga 8251659  T
Q  342 taaggttttggatttagccatgtaccttgaagccaatagttttttaccacctctccaaatcaacattgcagctttttcaaaagataaagaaagttnnnnn 441  Q
    |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  8251660 taaggttttggatttagccatgtaccttcaagccaatagttttttaccacctctccaaatcaacattgcagctttttcaaaagataaagaaagttaaaaa 8251759  T
Q  442 nnnnnnnngtgaaactattgtgtttctgttttcttcttcttaattggaaactctatgctatgactctctcctatcctattgctatatgatgggacttgct 541  Q
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8251760 caaaaaaagtgaaactattgtgtttctgttttcttcttcttaattggaaactctatgctatgactctctcctatcctattgctatatgatgggacttgct 8251859  T
Q  542 caatgcctttgcgcccacttccttcttctctttggcttttttgga-ttttgcatttaaccactcactttcattg-tttacagctaatcatgttattaaat 639  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||||    
T  8251860 caatgcctttgcgcccacttccttcttctctttggcttttttggatttttgcatttaaccacttactttcattgttttacagctaatcatgttattaaat 8251959  T
Q  640 atatgaactgagattcatactcagacccatcattttcttttgatttctttactataatatcatgtacttttctggtccaggcaataatacactcttat 737  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8251960 atatgaactgagattcatactcagacccatcattttcttttgatttctttactataatatcatgtacttttctggtccaggcaataatacactcttat 8252057  T

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