View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8085_high_33 (Length: 332)

Name: NF8085_high_33
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8085_high_33
NF8085_high_33
[»] chr2 (23 HSPs)
chr2 (20-316)||(9321828-9322114)
chr2 (22-221)||(9329438-9329642)
chr2 (22-159)||(9060271-9060408)
chr2 (33-112)||(10348653-10348732)
chr2 (22-112)||(12018134-12018224)
chr2 (22-159)||(8572675-8572811)
chr2 (20-112)||(10336648-10336740)
chr2 (20-157)||(9316862-9316999)
chr2 (20-105)||(10372719-10372804)
chr2 (33-112)||(10353995-10354074)
chr2 (33-112)||(9292778-9292857)
chr2 (22-112)||(12011813-12011903)
chr2 (21-101)||(9357954-9358034)
chr2 (50-109)||(8578748-8578807)
chr2 (22-112)||(7612735-7612825)
chr2 (22-112)||(12005385-12005475)
chr2 (20-112)||(7114865-7114957)
chr2 (20-112)||(9283394-9283486)
chr2 (20-79)||(14551156-14551215)
chr2 (33-82)||(9365445-9365494)
chr2 (22-112)||(11986745-11986835)
chr2 (20-112)||(9275360-9275452)
chr2 (46-112)||(17565334-17565400)
[»] scaffold0667 (1 HSPs)
scaffold0667 (20-112)||(5296-5388)
[»] chr3 (2 HSPs)
chr3 (20-112)||(37463359-37463451)
chr3 (38-112)||(39428733-39428807)
[»] chr4 (1 HSPs)
chr4 (33-112)||(26575729-26575808)
[»] chr5 (1 HSPs)
chr5 (22-112)||(36225589-36225679)
[»] chr8 (1 HSPs)
chr8 (20-112)||(41965942-41966034)


Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 316
Target Start/End: Original strand, 9321828 - 9322114
Alignment:
Q  20 gatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttcctccaac 119  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9321828 gatgaagtggtgagaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttcctccaac 9321927  T
Q  120 aattccggcggaggaacatcactcgccattggaaggaaggttcgttctagggttgtgtggtgcttctgcgttttggttgatttaggttttagtatttgtt 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||          ||||||||||||||||||||    
T  9321928 aattccggcggaggaacatcactcgccattggaaggaaggttcgttctagggttgtgtggttcttctgcg----------tttaggttttagtatttgtt 9322017  T
Q  220 gattgattgtcaccatccactaatcattctgctaccgctaccaagaaatagagtgagcgttgtttccttcatcaaatgtgtaagttgtgtgtgttaa 316  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9322018 gattgattgtcaccatccactaatcattctgctactgctaccaagaaatagagtgagcgttgtttccttcatcaaatgtgtaagttgtgtgtgttaa 9322114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 22 - 221
Target Start/End: Original strand, 9329438 - 9329642
Alignment:
Q  22 tgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttcctccaacaa 121  Q
    |||||| ||| |||||||||||||||||||||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||   |||||    
T  9329438 tgaagttgtgggaatcgattatggatttaagtgattttgaagttgaacggaatcggagaagtgattttaccggtaagcgggagaggatttccgttaacaa 9329537  T
Q  122 ttccggcggaggaacatcactcgccatt----ggaaggaaggttcgttctagggttgtgtggtgcttctgcgttttggttgattta-ggttttagtattt 216  Q
    ||||||| || ||||||||| |||||||    ||||||||||||||||||||||||||||||  || || |||||||||||||||| ||||||||| |||    
T  9329538 ttccggcagaagaacatcacccgccattggaaggaaggaaggttcgttctagggttgtgtggaactgctacgttttggttgatttagggttttagttttt 9329637  T
Q  217 gttga 221  Q
    |||||    
T  9329638 gttga 9329642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 9060408 - 9060271
Alignment:
Q  22 tgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttcctccaacaa 121  Q
    |||||| ||| |||||||||| ||||||||||||||| ||||||||||||||| ||||||||||||  |||||||||||||||| ||||||  | |  |     
T  9060408 tgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatcggaatcggagaagtgattgaaccggtaagcgggagaagatttcggcaagtat 9060309  T
Q  122 ttccggcggaggaacatcactcgccattggaaggaagg 159  Q
    |||||||||| ||||||||  |||||||||||||||||    
T  9060308 ttccggcggaagaacatcagccgccattggaaggaagg 9060271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 10348653 - 10348732
Alignment:
Q  33 gaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 112  Q
    |||||||||| ||||||||||||||| || |||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  10348653 gaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaagcgggagaagatttc 10348732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 12018224 - 12018134
Alignment:
Q  22 tgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 112  Q
    |||||| ||| |||||||||||||||||||||||||| |||||||| |||||| | |||||||||||||| ||||||||||||| ||||||    
T  12018224 tgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcgaagaagtgattttactggtaagcgggagaagatttc 12018134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 8572811 - 8572675
Alignment:
Q  22 tgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttcctccaacaa 121  Q
    |||||| ||| ||||||||||| |||||||||||||| ||||||||||||||| |||||||||| ||||| |||| |||||||| ||||||    |  |     
T  8572811 tgaagttgtgggaatcgattatagatttaagtgattttgaagttgatcggaatcggagaagtga-tttactggtatgcgggagaagatttcagtgactat 8572713  T
Q  122 ttccggcggaggaacatcactcgccattggaaggaagg 159  Q
    ||||| |||| ||||||||| |||||||||||||||||    
T  8572712 ttccgacggaagaacatcacccgccattggaaggaagg 8572675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 10336648 - 10336740
Alignment:
Q  20 gatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 112  Q
    |||||| | ||| |||||||||| ||||||||||||||| || |||||||||||| |||||||||||||||||||||| ||||||| ||||||    
T  10336648 gatgaatttgtgagaatcgattaaggatttaagtgattttgaggttgatcggaatcggagaagtgattttaccggtaaacgggagaagatttc 10336740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 157
Target Start/End: Original strand, 9316862 - 9316999
Alignment:
Q  20 gatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttcctccaac 119  Q
    |||||||| ||| ||||| ||||  |||||||||||||| ||||||||||||||| |||||||||||||||| |||||| |||||| ||||||  | |      
T  9316862 gatgaagttgtgagaatctattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattttactggtaagtgggagaagatttcggcgagt 9316961  T
Q  120 aattccggcggaggaacatcactcgccattggaaggaa 157  Q
    | |||||||||| || | |||  |||||||||||||||    
T  9316962 atttccggcggaagaccgtcagccgccattggaaggaa 9316999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 20 - 105
Target Start/End: Original strand, 10372719 - 10372804
Alignment:
Q  20 gatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggaga 105  Q
    |||||| | ||| ||||||||||  ||||||| |||||| ||||||||||||||| ||||||||||||||||||||||||||||||    
T  10372719 gatgaatttgtgggaatcgattaatgatttaaatgattttgaagttgatcggaatcggagaagtgattttaccggtaagcgggaga 10372804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 10353995 - 10354074
Alignment:
Q  33 gaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 112  Q
    |||||||||| |||||||| |||||| |||||||||||||||  |||||||||| |||||||||||||||| ||||||||    
T  10353995 gaatcgattagggatttaaatgattttgaagttgatcggaatctgagaagtgatattaccggtaagcgggaaaggatttc 10354074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 9292778 - 9292857
Alignment:
Q  33 gaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 112  Q
    |||||||||| ||||||||||||||| ||| |||||||||||  ||||||||||||||| |||| |||||||| ||||||    
T  9292778 gaatcgattagggatttaagtgattttgaaattgatcggaatctgagaagtgattttactggtacgcgggagaagatttc 9292857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 12011903 - 12011813
Alignment:
Q  22 tgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 112  Q
    |||||| ||| |||||||||||||||||||||||||| |||||||| |||||| |||||||||||| |    |||||||||||| ||||||    
T  12011903 tgaagttgtgagaatcgattatggatttaagtgattttgaagttgagcggaatcggagaagtgattgtggatgtaagcgggagaagatttc 12011813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 21 - 101
Target Start/End: Original strand, 9357954 - 9358034
Alignment:
Q  21 atgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgg 101  Q
    ||||||| ||| |||||||||| ||||||||||||||| ||||||||||  ||  |||||||||||||||| |||||||||    
T  9357954 atgaagttgtgagaatcgattaaggatttaagtgattttgaagttgatccaaaccggagaagtgattttactggtaagcgg 9358034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 50 - 109
Target Start/End: Complemental strand, 8578807 - 8578748
Alignment:
Q  50 aagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggat 109  Q
    ||||||||||||| ||||||||||| ||||||| |||| |||||||||||||||||||||    
T  8578807 aagtgatttagaaattgatcggaatcggagaagggattgtaccggtaagcgggagaggat 8578748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 7612735 - 7612825
Alignment:
Q  22 tgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 112  Q
    |||||| ||| ||||| |||| ||||||||| ||||||||| ||||||||||| |||| || | || |||||||||||| |||||||||||    
T  7612735 tgaagttgtgggaatcaattaaggatttaagcgatttagaaattgatcggaatcggaggagggtttgtaccggtaagcgagagaggatttc 7612825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 12005475 - 12005385
Alignment:
Q  22 tgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 112  Q
    |||||| ||| |||||||||||||||||||| ||||  |||||||| |||||| |||||||||||| |   ||||||||||||| ||||||    
T  12005475 tgaagttgtgagaatcgattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggaggtaagcgggagaagatttc 12005385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 7114957 - 7114865
Alignment:
Q  20 gatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 112  Q
    |||||| | ||| |||||||||| ||||||||||||||| ||||||||||||||| | |||||||||  ||| |||| ||| |||| ||||||    
T  7114957 gatgaatttgtgggaatcgattaaggatttaagtgattttgaagttgatcggaatcgaagaagtgatcgtactggtaggcgagagaagatttc 7114865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 9283486 - 9283394
Alignment:
Q  20 gatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 112  Q
    |||||| | ||| ||||| |||| ||||  ||||||||||||||||||||||||| |||| |||||||| || ||||||| ||||| ||||||    
T  9283486 gatgaatttgtgagaatctattagggatcgaagtgatttagaagttgatcggaatcggagtagtgatttaactggtaagcaggagaagatttc 9283394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 20 - 79
Target Start/End: Original strand, 14551156 - 14551215
Alignment:
Q  20 gatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggag 79  Q
    |||||||| ||| |||||||||| ||||| ||||||||| ||||||||||||||||||||    
T  14551156 gatgaagttgtgggaatcgattagggattgaagtgattttgaagttgatcggaattggag 14551215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 33 - 82
Target Start/End: Original strand, 9365445 - 9365494
Alignment:
Q  33 gaatcgattatggatttaagtgatttagaagttgatcggaattggagaag 82  Q
    |||||||||||||||||||||||||| || |||||||||||| |||||||    
T  9365445 gaatcgattatggatttaagtgattttgaggttgatcggaatcggagaag 9365494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 112
Target Start/End: Complemental strand, 11986835 - 11986745
Alignment:
Q  22 tgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 112  Q
    |||||| ||| ||||| |||||||||||||| ||||  |||||||| |||||| |||||||||||| |    |||||||||||| ||||||    
T  11986835 tgaagttgtgagaatcaattatggatttaagcgattctgaagttgagcggaatcggagaagtgattgtggatgtaagcgggagaagatttc 11986745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 9275360 - 9275452
Alignment:
Q  20 gatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 112  Q
    |||||||| ||| ||||| || |  |||||||||||||| ||  |||||||||||  ||||||||||| ||| ||||| ||||||| ||||||    
T  9275360 gatgaagttgtgggaatcaatcaacgatttaagtgattttgagattgatcggaatcagagaagtgattgtactggtaaccgggagaagatttc 9275452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 46 - 112
Target Start/End: Complemental strand, 17565400 - 17565334
Alignment:
Q  46 atttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 112  Q
    ||||||||||||| || |||||||||| | |||| || |||| ||| |||||||| |||||||||||    
T  17565400 atttaagtgatttcgacgttgatcggagtcggaggagggattgtactggtaagcgagagaggatttc 17565334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0667 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: scaffold0667
Description:

Target: scaffold0667; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 5296 - 5388
Alignment:
Q  20 gatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 112  Q
    |||||||| ||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||| ||||||    
T  5296 gatgaagttgtgagaatcgattatggatttaagtgattttgaagttgatcggaatcggagaagtgattttaccggtaagcgggagaagatttc 5388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 9e-24; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 37463359 - 37463451
Alignment:
Q  20 gatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 112  Q
    |||||||| ||| ||||||||||  |||||||||||||| ||||||||||||||| |||||||||||| ||| ||||| ||||||||||||||    
T  37463359 gatgaagttgtgagaatcgattaaagatttaagtgattttgaagttgatcggaatcggagaagtgattctactggtaaacgggagaggatttc 37463451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 38 - 112
Target Start/End: Original strand, 39428733 - 39428807
Alignment:
Q  38 gattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 112  Q
    ||||| |||||||| | |||| |||||||||||||||||||| || ||||  |||||||||||||||||||||||    
T  39428733 gattaaggatttaactcattttgaagttgatcggaattggaggagggattgcaccggtaagcgggagaggatttc 39428807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 33 - 112
Target Start/End: Original strand, 26575729 - 26575808
Alignment:
Q  33 gaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 112  Q
    |||||||||| | ||||||||||||| ||||||||||||||| ||||||||||| |||||||||| ||||||| ||||||    
T  26575729 gaatcgattaagaatttaagtgattttgaagttgatcggaatcggagaagtgatattaccggtaaacgggagaagatttc 26575808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 22 - 112
Target Start/End: Original strand, 36225589 - 36225679
Alignment:
Q  22 tgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 112  Q
    |||||| ||||||||||||||  |||||||||||||| ||||||||||||||| |||| || ||||  ||  |||||||||||||||||||    
T  36225589 tgaagttgtgcgaatcgattaacgatttaagtgattttgaagttgatcggaatcggaggagggattgcactagtaagcgggagaggatttc 36225679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 20 - 112
Target Start/End: Complemental strand, 41966034 - 41965942
Alignment:
Q  20 gatgaagtggtgcgaatcgattatggatttaagtgatttagaagttgatcggaattggagaagtgattttaccggtaagcgggagaggatttc 112  Q
    |||||||| ||| |||||||||| ||||  ||||||||| || |||||||||||| |||||| |||||||||||||||  |||||| ||||||    
T  41966034 gatgaagttgtgggaatcgattaaggatcgaagtgatttcgaggttgatcggaatcggagaactgattttaccggtaatagggagaagatttc 41965942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University