View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_high_35 (Length: 311)
Name: NF8085_high_35
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_high_35 |
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Alignment Details
Target: chr3 (Bit Score: 273; Significance: 1e-152; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 297
Target Start/End: Complemental strand, 1625886 - 1625590
Alignment:
| Q |
1 |
tatttatatatagtcatagccccacttaatgcattaaaaagtaagcctaagaatatttctatgtgaagctacatcaggacacttgtttttcttgcaatat |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1625886 |
tatttatatatagtcatagccccaattaatgcattaaaaagtaagcctaagaatgtttctatgtgaagctacatcaggacacttgtttttcttgcaatat |
1625787 |
T |
|
| Q |
101 |
caagtaattaggctccaactttctgaattattaagtgataccattttttcctactagataagattttaatcctatttaattaattgtcacttacaattga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |
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| T |
1625786 |
caagtaattaggctccaactttctgaattattaagtaataccattttttcctactagataagattttaatcctatttaattaattgtcacttgcaagtga |
1625687 |
T |
|
| Q |
201 |
attcatagtttgtatctgtgtcattcttcattatcactttcagttcattccacacgtttcaacctttacactctaccgacaaaaattatgtacatat |
297 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
1625686 |
attcatagtttgtatctgtgtcattcttcattatcactttcagttcattccacacgtttcaacctttacactctaccgacaaaaattatgtatatat |
1625590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 30 - 287
Target Start/End: Complemental strand, 1608856 - 1608598
Alignment:
| Q |
30 |
tgcattaaaaagtaagcctaagaatatttctatgtgaagctacatcaggacacttgtttttcttgcaatatcaagtaattaggctccaactttctgaatt |
129 |
Q |
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|||||| | |||||||| |||||||||| ||||||||| | |||| | |||||||||||||||||||||| ||||||||| |||| |||||||||| ||| |
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| T |
1608856 |
tgcatttataagtaagcttaagaatattgctatgtgaatccacattaagacacttgtttttcttgcaataacaagtaatttggcttcaactttctggatt |
1608757 |
T |
|
| Q |
130 |
attaagtgataccattttttcctactagataagattttaatcctattt--aattaattgtcacttacaattgaattcatagtttgtatctgtgtcattct |
227 |
Q |
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| T |
1608756 |
attaagtaataccattttttc-taatagataatattttattcctatattcaattaattctttcttgcatttgcatccactgtctgtatctgtgtcatttt |
1608658 |
T |
|
| Q |
228 |
tcattatcactttcagttcattccacacgtttcaacctttacactctaccgacaaaaatt |
287 |
Q |
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|||||||||||| || |||||||||||||||| ||||| |||||| || ||||||||| |
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| T |
1608657 |
tcattatcacttgcaattcattccacacgttttcaccttcacactccgcctacaaaaatt |
1608598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 30 - 287
Target Start/End: Complemental strand, 1632344 - 1632086
Alignment:
| Q |
30 |
tgcattaaaaagtaagcctaagaatatttctatgtgaagctacatcaggacacttgtttttcttgcaatatcaagtaattaggctccaactttctgaatt |
129 |
Q |
| |
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|||||| | ||| |||| ||||||| || ||||||||| | |||| ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
1632344 |
tgcatttataagcaagcttaagaatgttgctatgtgaatccacattaggacacttgtttttcttgcaatgacaagtaattaggcttcaactttctgaatt |
1632245 |
T |
|
| Q |
130 |
attaagtgataccattttttcctactagataagattttaatcc--tatttaattaattgtcacttacaattgaattcatagtttgtatctgtgtcattct |
227 |
Q |
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|||||| |||||||||||| ||| |||| ||||||||| ||| |||| |||||||| | ||| |||||| || || || ||||||||||||||| | |
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| T |
1632244 |
gttaagtaataccatttttt-ctaatagagaagattttattcctatattcaattaattctttcttgcaattgcatccaccgtctgtatctgtgtcatttt |
1632146 |
T |
|
| Q |
228 |
tcattatcactttcagttcattccacacgtttcaacctttacactctaccgacaaaaatt |
287 |
Q |
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|||||||||||| || |||||||||||||||| ||||| |||||| || ||||||||| |
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| T |
1632145 |
tcattatcacttgcaattcattccacacgtttacaccttcacactccgcctacaaaaatt |
1632086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 39 - 287
Target Start/End: Complemental strand, 1614323 - 1614073
Alignment:
| Q |
39 |
aagtaagcctaagaatatttctatgtgaagctacatcaggacacttgtttttcttgcaatatcaagtaattaggctccaactttctgaattattaagtga |
138 |
Q |
| |
|
|||||||| ||||||| || ||||||||| | |||| || |||||||||||||||||| || ||||||||| |||| |||||||||| |||||||||| | |
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| T |
1614323 |
aagtaagcttaagaatgttgctatgtgaatccacattagcacacttgtttttcttgcactaacaagtaatttggcttcaactttctggattattaagtaa |
1614224 |
T |
|
| Q |
139 |
taccattttttcctactagataagattttaatcctattt--aattaattgtcacttacaattgaattcatagtttgtatctgtgtcattcttcattatca |
236 |
Q |
| |
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| |||||||||| || |||||||||||||| |||||| | |||||||| | ||| | |||| || || || ||||||||||||||| |||||||||| |
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| T |
1614223 |
ttccattttttc-taatagataagattttattcctatattcaattaattctttcttgctattgcatccactgtctgtatctgtgtcatttttcattatca |
1614125 |
T |
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| Q |
237 |
ctttcagttcattccacacg-tttcaacctttacactctaccgacaaaaatt |
287 |
Q |
| |
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||| || ||||||||| ||| ||||| |||| |||||| || ||||||||| |
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| T |
1614124 |
cttgcaattcattccaaacgttttcacccttcacactccgcctacaaaaatt |
1614073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 30 - 150
Target Start/End: Original strand, 10818244 - 10818363
Alignment:
| Q |
30 |
tgcattaaaaagtaagcctaagaatatttctatgtgaagctacatcaggacacttgtttttcttgcaatatcaagtaattaggctccaactttctgaatt |
129 |
Q |
| |
|
|||||| | |||||||| || |||| || ||||||||| | |||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
10818244 |
tgcatttataagtaagcttatgaatgttgctatgtgaatc-acattaggacacttgtttttcttgcaataacaagtaattaggcttcaactttctgaatt |
10818342 |
T |
|
| Q |
130 |
attaagtgataccattttttc |
150 |
Q |
| |
|
||||||| ||||||||||||| |
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| T |
10818343 |
attaagtaataccattttttc |
10818363 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 18786836 - 18786553
Alignment:
| Q |
1 |
tatttatatatagtcatagccccacttaatgcattaaaaagtaagcctaagaatatttctatgtgaagctacatcaggacacttgtttttcttgcaatat |
100 |
Q |
| |
|
||||| |||||| |||||||||||||||||||||||||||||||| | |||||||| ||||||||||||||| |||||||||||||||||||||||| |
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| T |
18786836 |
tatttttatataaccatagccccacttaatgcattaaaaagtaagcttgagaatatta-tatgtgaagctacatgaggacacttgtttttcttgcaataa |
18786738 |
T |
|
| Q |
101 |
caagtaattaggctccaactttctgaattattaagtgataccattttttcctactagataagattttaatcctatttaattaattgtcacttacaattga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||| |
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| T |
18786737 |
caagtaattaggctccaactttctgaattattaagtaaaactattttttcctactagataagattttaatcctatttaattaattatcacttgcaattga |
18786638 |
T |
|
| Q |
201 |
attcatagtttgtatctgtgtcattcttcattatcactttcagttcattccacacg-tttcaacctttacactctaccgacaaaa |
284 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |||||||||| |||||| ||| |||||| |
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| T |
18786637 |
attcatagtttgtatctgtgtcattcttcattatcactttcagttcatttcacatgttttcaaccttcacactccacctacaaaa |
18786553 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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