View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_high_38 (Length: 308)
Name: NF8085_high_38
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_high_38 |
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Alignment Details
Target: chr5 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 19 - 298
Target Start/End: Original strand, 194057 - 194335
Alignment:
| Q |
19 |
gtttggcagtgactttttgcacaccagaaaagctggggcaaagagatgagaaaagctagagatttagaagaagagaaggaagttgtgataggaaaaggat |
118 |
Q |
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| T |
194057 |
gtttggcagtgactttttgcacactagaaa-gctggggcaaagagatgagaaaagctagagatttagaagaagagaaggaagttgtgataggaaaaggat |
194155 |
T |
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| Q |
119 |
ttattagatttgaatggtttgaagatggttgggatgagaatgaaccaaaacggcttgacttggatgtgtatttgccacagctagagagggttgggaaaca |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |
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| T |
194156 |
ttattagatttgaatggtttgaagatggttgggatgaggatgaaccaaaacggcttgacttggatgtgtatttgccacaactagagatggttgggaaaca |
194255 |
T |
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| Q |
219 |
agtcctccctaccataatctcccaacaaaatccacctgtctcatgtttgattaataatcctttcattctatgggtctctg |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |||| |
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| T |
194256 |
agtcctccctaccataatctcccaacaaaatccacctgtctcatgtttgattaacaatcctttcattccatgggtttctg |
194335 |
T |
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