View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_high_39 (Length: 301)
Name: NF8085_high_39
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_high_39 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 284
Target Start/End: Complemental strand, 45163431 - 45163149
Alignment:
| Q |
1 |
aacttattagcattttagtattatatgaagtacgaataaataaatttgtccccgttgttacaacctagtagtttgaccataaaaaatattttatttgaaa |
100 |
Q |
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| T |
45163431 |
aacttattagcattttagtattatatgaagtacgaataaataaatttgtccccgttgttacaacctagtagttcgaccataaaaaatattttatttggaa |
45163332 |
T |
|
| Q |
101 |
tctcgggctcaaacccgggttaccacattcgtccttgcctataaagnnnnnnnnnnnnnnnntttagaataagttacctggagattgagcttgagcattt |
200 |
Q |
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| T |
45163331 |
tctcgggctcaaacccgggttaccacattcctccttgcctataaag-aaataaaaataaaaatttagaataagttacctggagattgagcttgagcattt |
45163233 |
T |
|
| Q |
201 |
gcatgaagaattgttgaggaaataaaaatgagaagaagaagaagattcattttgttggaataacttgttgtgtacagaaccttc |
284 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45163232 |
gcatgaagaattgttgaggaaataaaaatgagaagaagaagaagattcattttgttggaataacttgttgtgtacagaaccttc |
45163149 |
T |
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