View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8085_high_4 (Length: 724)

Name: NF8085_high_4
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8085_high_4
NF8085_high_4
[»] chr5 (1 HSPs)
chr5 (1-708)||(34084947-34085668)


Alignment Details
Target: chr5 (Bit Score: 659; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 659; E-Value: 0
Query Start/End: Original strand, 1 - 708
Target Start/End: Original strand, 34084947 - 34085668
Alignment:
Q  1 cacacgtctaccatcaccacaaagcttcttaggaaatatttcttcacatgtctccatgaacgcttcaacaatgacatgatggtgacactttgcattaagc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34084947 cacacgtctaccatcaccacaaagcttcttaggaaatatttcttcacatgtctccatgaacgcttcaacaatgacatgatggtgacactttgcattaagc 34085046  T
Q  101 tgaagaaaacactcaagtaattcttgaagatcattttctgaataaatctgtctctccaatatcatttgaagtatagagtttcgaaaatcttcatacggct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34085047 tgaagaaaacactcaagtaattcttgaagatcattttctgaataaatctctctctccaatatcatttgaagtatagagtttcgaaaatcttcatacggct 34085146  T
Q  201 ccttggattccttctcaacggcaatgctatctatgagttttgtagccggctttaaaatcctataattattattgttgtcgtttgagatggtggtggaagt 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34085147 ccttggattccttctcaacggcaatgctatctatgagttttgtagccggctttaaaatcctataattattattgttgtcgtttgagatggtggtggaagt 34085246  T
Q  301 gaaatctttgtcaccggtgttggcgtcgtgggaagtggtgggagaagtgagggtattagggtttgtgttttggttaaaggagattttaggtttttgagag 400  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34085247 gaaatctttgtcatgggtgttggcgtcgtgggaagtggtgggagaagtgagggtattagggtttgtgttttggttaaaggagattttaggtttttgagag 34085346  T
Q  401 ggttcaagtacgttagagggttttattttgatgcaaccacaggttttgttagaggagaaaagggttttgacgaggcttctcttattgaaattgaaagaca 500  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34085347 ggttcaagtacgttagagggttttattttgatgcaaccacagcttttgttagaggagaaaagggttttgacgaggcttctcttattgaaattgaaagaca 34085446  T
Q  501 taat--------------tatggttttggttatgagaggaataagggtatacgtgagaggtatagatgatgatgttgttggtaagattcgttttctaatt 586  Q
    ||||              ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34085447 taattaaaggactatgactatggttttggttatgagaggaataagggtatacgtgagaggtatagatgatgatgttgttggtaagattcgttttctaatt 34085546  T
Q  587 gagaataggttaaaatgtgaaagaaagaggaagaaggtagtagtaaggtttgtggttagaagtttttatcgtgatagtgaaggtagagtcgtggaatgtg 686  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34085547 gagaataggttaaaatgtgaaagaaagaggaagaaggtagtagtaaggtttgtggttagaagtttttatcgtgatagtgaaggtagagtcgtggaatgtg 34085646  T
Q  687 gatagtagttacataaacattg 708  Q
    ||||||||||||||||||||||    
T  34085647 gatagtagttacataaacattg 34085668  T

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