View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8085_high_40 (Length: 296)

Name: NF8085_high_40
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8085_high_40
NF8085_high_40
[»] chr8 (2 HSPs)
chr8 (26-200)||(31592154-31592324)
chr8 (225-280)||(31592101-31592156)


Alignment Details
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 31592324 - 31592154
Alignment:
Q  26 aaatagaagtactcctaaacatcttaaagatagagtgcttcattgatga---aaatcataagaaaatcctttagtttaatttggatcaacaaacaactat 122  Q
    |||||||||||||||||| |||||| ||||||||||| ||||||||| |   |||||| ||||||||||||||||||    ||||||||||||||||| |    
T  31592324 aaatagaagtactcctaagcatcttgaagatagagtgtttcattgataataaaaatcagaagaaaatcctttagttt----tggatcaacaaacaactct 31592229  T
Q  123 tgacttttcaaaccaagattataaaaccttgtaaacactcgttagtgtgttttcaaacgttgacaaccctctaaagat 200  Q
    ||||||||||||||| ||||||||||||||||| ||||   || ||||||||||||| |||||| ||| |||||||||    
T  31592228 tgacttttcaaaccaggattataaaaccttgtagacac---ttggtgtgttttcaaatgttgacgaccttctaaagat 31592154  T

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Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 31592156 - 31592101
Alignment:
Q  225 gattctgacattcaatcaaatatctagatgcttgtcttcaactccaatgaaaaata 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31592156 gattctgacattcaatcaaatatctagatgcttgtcttcaactccaatgaaaaata 31592101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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