View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8085_high_44 (Length: 280)

Name: NF8085_high_44
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8085_high_44
NF8085_high_44
[»] chr4 (1 HSPs)
chr4 (1-280)||(47233797-47234080)


Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 47233797 - 47234080
Alignment:
Q  1 ctttgatgagtttgattaagtacttaatcatcatctaataatctagtaccattagttattttatatttaaatagataggnnnnnnnggaaagaagagagt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||    
T  47233797 ctttgatgagtttgattaagtacttaatcatcatctaataatctagtaccattagttattttatatttaaatagataggaaaaaaaggaaagaagagagt 47233896  T
Q  101 tatt----tatatagtaaactcacggcggttaacaaccctttcctcagtaacatgggtggttggtgcagaacgcattgcaatcctatcgttgcatttggg 196  Q
    ||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47233897 tattaatttatatagtaaactcacggcggttaacaaccctttcctcagtaacatgggtggttggtgcagaacgcattgcaatcctatcgttgcatttggg 47233996  T
Q  197 agtggagctagttcgaatcctatactctggattcatgcagtggctaggtgcctgaagaaaatcaatgaaacaataaagtaaatt 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47233997 agtggagctagttcgaatcctatactctggattcatgcagtggctaggtgcctgaagaaaatcaatgaaacaataaagtaaatt 47234080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University