View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_high_63 (Length: 217)
Name: NF8085_high_63
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_high_63 |
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Alignment Details
Target: chr4 (Bit Score: 114; Significance: 5e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 5e-58
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 40974304 - 40974176
Alignment:
| Q |
15 |
aatatggctcatcgcattactataattactttggaattttgagcttttttccattcccctctcctgtggcatttattaataatgactcggataaaagtga |
114 |
Q |
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| T |
40974304 |
aatatggctcatcgaattactataat-actttggaattttgagcttttttccattcccctctcctgtggcatttattaataatgactcggataaaagtga |
40974206 |
T |
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| Q |
115 |
tttagacatttatttccttagtatgtataa |
144 |
Q |
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| T |
40974205 |
tttagacatttattttcttagtatgtataa |
40974176 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 40970940 - 40970884
Alignment:
| Q |
144 |
atacgagtgactcaaccaaaattggaaactgaatttttcaagtcctcctctttaaac |
200 |
Q |
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| T |
40970940 |
atacgagtgactcaaccaaaattggaaactgaatttttcaagtcctcctctttaaac |
40970884 |
T |
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