View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_high_8 (Length: 568)
Name: NF8085_high_8
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 534; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 534; E-Value: 0
Query Start/End: Original strand, 1 - 550
Target Start/End: Original strand, 24241142 - 24241691
Alignment:
| Q |
1 |
aaatgttatacacttcaaatattaaaagaacttgcaaaagttgtcctggatgaagtagtagcaattcatacacaccaatcctatatagtaaaaccatgct |
100 |
Q |
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| T |
24241142 |
aaatgttatacacttcaaatattaaaagaacttgcaaaagttgtcctggatgaagtagtagcaattcatacacaccaatcctatatagtaaaaccatgct |
24241241 |
T |
|
| Q |
101 |
tgcctccaataaggattgatgcacaaaacagttggaattaccaaaactattgatgtgtatgccaccacaaagctcacacgaaaaacatacatgtccaccc |
200 |
Q |
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| T |
24241242 |
tgcctccaataaggattgatgcacaaaacagttggaattaccaaaactattgatgtgtatgccacaacaaagctcacacggaaaacatacatgtccaccc |
24241341 |
T |
|
| Q |
201 |
aactatcattatctccatcactgttcaaaccattcggtaatgtagcaggtgcttctccacttggattgcaactttttggcaatggaagcccacaaagaaa |
300 |
Q |
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| T |
24241342 |
aactatcattatctccatcactgttcaaaccattcggtaatgtagcaagtgcttctccacttggattgcaactttttggcaatggaagcccacaaagaaa |
24241441 |
T |
|
| Q |
301 |
ttgattaccctcgtagctgctttcatcaaaagtactaaattgtcctttcatttcaggtgttgcacctgataaattgttgtatgccacactaaatacttca |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
24241442 |
ttgattaccctcgtagctgctttcatcaaaagtactaaattgtcctttcatttcaggtgttgcacctgataaattgttgtgtgccacactaaatacttca |
24241541 |
T |
|
| Q |
401 |
aggtagtgcaatccacttagccgaggaggaatttggccactcaacatgttgaaagaaagatctaaactctcaacctgtaccaaatcagagaatgtagctg |
500 |
Q |
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| T |
24241542 |
aggtagtgcaatccacttagccgaggaggaatttggccactcaacatgttgaaagaaagatctaaactctcaacctgtaccaaatcagagaatgtagctg |
24241641 |
T |
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| Q |
501 |
gaatttttccggtgaaaaagttgttggacaagttcaatgctcgaattctt |
550 |
Q |
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| T |
24241642 |
gaatttttccggtgaaaaagttgttggacaagttcaatgctcgaattctt |
24241691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 23 - 550
Target Start/End: Original strand, 24255976 - 24256503
Alignment:
| Q |
23 |
taaaagaacttgcaaaagttgtcctggatgaagtagtagcaattcatacacaccaatcctatatagtaaaaccatgcttgcctccaataaggattgatgc |
122 |
Q |
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||||| |||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| ||| |||||||||||| |
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| T |
24255976 |
taaaaaaacttgtacaagttgtccacgatgaagtagtagcaattcatacacaccaatcctatataataaaaccatgcctgccgccagtaaggattgatgt |
24256075 |
T |
|
| Q |
123 |
acaaaacagttggaattaccaaaactattgatgtgtatgccaccacaaagctcacacgaaaaacatacatgtccacccaactatcattatctccatcact |
222 |
Q |
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||| |||| ||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| ||||||||||||||||| | |
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| T |
24256076 |
acagaacaattggaattaccaacactattgatgtgtatgccacaacaaagctcacacggaaaacatacatgtccacccaaatatcattatctccatcatt |
24256175 |
T |
|
| Q |
223 |
gttcaaaccattcggtaatgtagcaggtgcttctccacttggattgcaactttttggcaatggaagcccacaaagaaattgattaccctcgtagctgctt |
322 |
Q |
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|||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || |||||| |
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| T |
24256176 |
gttcaaaccatttggtaatgtagcaggtgcttgttcacttggattgcaactttttggcaatggaggcccacaaagaaattgattaccctcataactgctt |
24256275 |
T |
|
| Q |
323 |
tcatcaaaagtactaaattgtcctttcatttcaggtgttgcacctgataaattgttgtatgccacactaaatacttcaaggtagtgcaatccacttagcc |
422 |
Q |
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|||||||| ||||||| |||||||||| ||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
24256276 |
tcatcaaatgtactaagttgtcctttccattcaggtgttgcaccagataaattgttgtgcgccacactaaatacttcaaggtagtgcaatccacttagct |
24256375 |
T |
|
| Q |
423 |
gaggaggaatttggccactcaacatgttgaaagaaagatctaaactctcaacctgtaccaaatcagagaatgtagctggaatttttccggtgaaaaagtt |
522 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| ||| || || |||| || |
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| T |
24256376 |
gaggaggaatttggccactcaacatgttgaaagaaagatctaaactctcaacctgtaccaaattggagaatgttgctggaactttcccagttaaaagatt |
24256475 |
T |
|
| Q |
523 |
gttggacaagttcaatgctcgaattctt |
550 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
24256476 |
gttggacaagttcaatgctcgaattctt |
24256503 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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