View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_high_9 (Length: 564)
Name: NF8085_high_9
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_high_9 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 1 - 409
Target Start/End: Original strand, 35902367 - 35902774
Alignment:
| Q |
1 |
gaatatctttagagtactctggatgaccttggattcccataatatgatctccatatttaaacatctcaattccagttttatctgacctagcaattacctc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35902367 |
gaatatctttagagtactctggatgaccttggattcccataatatgatctccatatttaaacatctcaattccagttttatctgacctagcaattacctc |
35902466 |
T |
|
| Q |
101 |
tgcctttgcaggtaactcttgaatctaatttgataaaatagcacaagtataacccatcaattactattatatattatgataaaaaatatttgaggctatg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35902467 |
tgcctttgcaggtaactcttgaatctaatttgataaaatagcacaagtataacc-atcaattactattatatattatgataaaaaatatttgaggctata |
35902565 |
T |
|
| Q |
201 |
gtaactttttatgtatgtatacctcatccctgtggcattcgattatagaaagctttgttggaagatcaagagaagggaaggaaatatgtgatgacaatgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35902566 |
gtaactttttatgtatgtatacctcatccctgtggcattcgattatggaaagctttgttggaagatcaagagaagggaaggaaatatgtgatgacaatgt |
35902665 |
T |
|
| Q |
301 |
tatggttctcacatcaatgtcccaaccagtaggagagcgacccacctttcctcccaatgcacggccaagtaccttatcaaatatgatgctgagttattaa |
400 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35902666 |
tatggttctcacaccaatgtcccaaccagtaggagagcgacccacctttcctcccaatgcacggccaagtaccttatcaaatatgatgctgagttattaa |
35902765 |
T |
|
| Q |
401 |
cttcataat |
409 |
Q |
| |
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||||||||| |
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| T |
35902766 |
cttcataat |
35902774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 441 - 549
Target Start/End: Original strand, 35902775 - 35902882
Alignment:
| Q |
441 |
tactctattgttgtatttttaattaagtgtaagtttcacggaatttttgaaatgcaaaatcattaaattgacataattgaggatccatttagttctagtg |
540 |
Q |
| |
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||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35902775 |
tactctattgttgtatttttaattaagtgta-gtttcacgaaatttttgaaatgcaaaatcattaaattgacataattgaggatccatttagttctagtg |
35902873 |
T |
|
| Q |
541 |
tttctttgt |
549 |
Q |
| |
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||||||||| |
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| T |
35902874 |
tttctttgt |
35902882 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 66; Significance: 7e-29; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 6 - 119
Target Start/End: Complemental strand, 37024561 - 37024448
Alignment:
| Q |
6 |
tctttagagtactctggatgaccttggattcccataatatgatctccatatttaaacatctcaattccagttttatctgacctagcaattacctctgcct |
105 |
Q |
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|
|||||||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||||||||| |||||||| ||||||| || || |||| |
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| T |
37024561 |
tctttagagtactcaggatgaccttgaattcccataatgtgatctccatatctaaacatctcaattccagtcttatctgatttagcaatcacttcagcct |
37024462 |
T |
|
| Q |
106 |
ttgcaggtaactct |
119 |
Q |
| |
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| ||||||| |||| |
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|
| T |
37024461 |
tggcaggtagctct |
37024448 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 219 - 275
Target Start/End: Complemental strand, 37024309 - 37024253
Alignment:
| Q |
219 |
atacctcatccctgtggcattcgattatagaaagctttgttggaagatcaagagaag |
275 |
Q |
| |
|
||||||||||||| ||||||| || || |||||||| |||||||| |||||||||| |
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| T |
37024309 |
atacctcatccctatggcattgaataatggaaagcttcgttggaagttcaagagaag |
37024253 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 27 - 103
Target Start/End: Original strand, 2051979 - 2052055
Alignment:
| Q |
27 |
ccttggattcccataatatgatctccatatttaaacatctcaattccagttttatctgacctagcaattacctctgc |
103 |
Q |
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|||||||| |||| || |||| |||||| ||||||||||||||||||| || ||||||| | ||||||||||||| |
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| T |
2051979 |
ccttggatgcccaacatgtgatttccatacctaaacatctcaattccagtcttttctgaccaaccaattacctctgc |
2052055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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