View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8085_low_13 (Length: 542)
Name: NF8085_low_13
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 203; Significance: 1e-110; HSPs: 12)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 15 - 249
Target Start/End: Complemental strand, 30393919 - 30393685
Alignment:
| Q |
15 |
cattattctcccttataactagcaagaccactagcaagtaacttgaaaatcttatagttagtctttgggaagtcagacattttgttcaatacatctttta |
114 |
Q |
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|||| ||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30393919 |
catttttctcccccataactagcaagaccactagctagtaacttgaaaatcttatagttagtctttgggaagtcagacattttgttcaatacatctttta |
30393820 |
T |
|
| Q |
115 |
tttgctcaggttctgtgagagttaaccttggttttattccaaaccaaataaaagaattctttcctgcatatgatacacaactctataagaaaatctagaa |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||| |
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| T |
30393819 |
tttgctcaggttctgtgagagttaaccttggttttattccaaaccaaataaaagaattctttcctgcatataataagcaactctataagaaaatctagaa |
30393720 |
T |
|
| Q |
215 |
ttgaaagatcataaaaaataaaatcagagaatagg |
249 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
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|
| T |
30393719 |
ttgaaagatcataaaaaataaaataagagaatagg |
30393685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 153; E-Value: 8e-81
Query Start/End: Original strand, 355 - 523
Target Start/End: Complemental strand, 30393117 - 30392949
Alignment:
| Q |
355 |
gtgggtgtctagtactgaatttgaatttgcttttatggttttgatttctttatcctttgcagttgtagtgaattacccatttggattgttcctattttgc |
454 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
30393117 |
gtgggtgtctagtactgaatttggatttgcttttatggttttgatttctttatcctttgcggttgtagtgaattacccatttggattgttcctattttgc |
30393018 |
T |
|
| Q |
455 |
tttcatttggtcagtctctatgtcctccggctttttgtaaattttctttttaattaatctacttaaggt |
523 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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|
| T |
30393017 |
tttcatttggtccgtctctatgtcctccggctttttgtaaattttctttttaattagtctacttaaggt |
30392949 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 93; E-Value: 5e-45
Query Start/End: Original strand, 20 - 184
Target Start/End: Complemental strand, 30383763 - 30383599
Alignment:
| Q |
20 |
ttctcccttataactagcaagaccactagcaagtaacttgaaaatcttatagttagtctttgggaagtcagacattttgttcaatacatcttttatttgc |
119 |
Q |
| |
|
|||||||| |||| ||||||| || |||| ||||||||||||||||| || |||| ||||||||| |||||||| |||||||| ||||||||||||||| |
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| T |
30383763 |
ttctccctcataattagcaagtgcattagctagtaacttgaaaatcttgtaattaggctttgggaattcagacatcttgttcaacacatcttttatttgc |
30383664 |
T |
|
| Q |
120 |
tcaggttctgtgagagttaaccttggttttattccaaaccaaataaaagaattctttcctgcata |
184 |
Q |
| |
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||||||||||| | ||| | ||||||||||||||||||||||||| |||||||||| |||||||| |
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|
| T |
30383663 |
tcaggttctgtcaaagtcacccttggttttattccaaaccaaatataagaattcttccctgcata |
30383599 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 246 - 351
Target Start/End: Complemental strand, 30393457 - 30393352
Alignment:
| Q |
246 |
taggtttcattcgcctctctcaagatatggattcacttctcgtcaattcactcaccacannnnnnnnatttggtttcgcactcatgcacaggttcgctgg |
345 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||| |||||||| || | |
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| T |
30393457 |
taggttccattcgcctctctcaagatatggattcactgctcgtcaattcactcaccacatttttttcatttggttttgcactcataaacaggttcactag |
30393358 |
T |
|
| Q |
346 |
attgtg |
351 |
Q |
| |
|
|||||| |
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|
| T |
30393357 |
attgtg |
30393352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 23784893 - 23785000
Alignment:
| Q |
77 |
ctttgggaagtcagacattttgttcaatacatcttttatttgctcaggttctgtgagagttaaccttggttttattccaaaccaaataaaagaattcttt |
176 |
Q |
| |
|
||||||||| |||||||| ||||| ||||| ||| ||||||| |||||||| ||||| | | || |||||| |||||||||||||||||||| || || |
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|
| T |
23784893 |
ctttgggaactcagacatcttgttgaatacttctcttatttgttcaggttcattgagaatcacccatggtttcattccaaaccaaataaaagactttttc |
23784992 |
T |
|
| Q |
177 |
cctgcata |
184 |
Q |
| |
|
|||||||| |
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|
| T |
23784993 |
cctgcata |
23785000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 23767234 - 23767127
Alignment:
| Q |
77 |
ctttgggaagtcagacattttgttcaatacatcttttatttgctcaggttctgtgagagttaaccttggttttattccaaaccaaataaaagaattcttt |
176 |
Q |
| |
|
||||||||| ||||| || ||||| ||||| ||| |||||||||||||||| | ||| | | || ||||||| ||||||||||||||||||| || || |
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|
| T |
23767234 |
ctttgggaactcagatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttgttccaaaccaaataaaagattttttc |
23767135 |
T |
|
| Q |
177 |
cctgcata |
184 |
Q |
| |
|
|||||||| |
|
|
| T |
23767134 |
cctgcata |
23767127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 23796427 - 23796320
Alignment:
| Q |
77 |
ctttgggaagtcagacattttgttcaatacatcttttatttgctcaggttctgtgagagttaaccttggttttattccaaaccaaataaaagaattcttt |
176 |
Q |
| |
|
||||||||| ||||| || ||||| ||||| ||| |||||||||||||||| | ||| | | || ||||||| ||||||||||||||||||| || || |
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|
| T |
23796427 |
ctttgggaactcagatatcttgttgaatacttctcttatttgctcaggttcattaagaatcacccatggttttgttccaaaccaaataaaagattttttc |
23796328 |
T |
|
| Q |
177 |
cctgcata |
184 |
Q |
| |
|
|||||||| |
|
|
| T |
23796327 |
cctgcata |
23796320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 105 - 183
Target Start/End: Original strand, 8381814 - 8381892
Alignment:
| Q |
105 |
acatcttttatttgctcaggttctgtgagagttaaccttggttttattccaaaccaaataaaagaattctttcctgcat |
183 |
Q |
| |
|
|||||||||||| |||| |||||||||||| | | ||||||| || ||||| ||||||| |||| |||||| ||||||| |
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|
| T |
8381814 |
acatcttttattagctctggttctgtgagaatcagccttggtgttgttccagaccaaatgaaaggattcttccctgcat |
8381892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 30436024 - 30435913
Alignment:
| Q |
72 |
ttagtctttgggaagtcagacattttgttcaatacatcttttatttgctcaggttctgtgagagttaaccttggttttattccaaaccaaataaaagaat |
171 |
Q |
| |
|
|||| |||| ||||||| | |||||||| | ||||||||| ||||||||||| ||||| | | | ||||||| || ||||||||| |||||||| | |
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|
| T |
30436024 |
ttaggcttttggaagtcgtaaattttgttaattacatctttaatttgctcaggatctgttatgttcacccttggtgttggtccaaaccagataaaagagt |
30435925 |
T |
|
| Q |
172 |
tctttcctgcat |
183 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30435924 |
tctttcctgcat |
30435913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 183
Target Start/End: Complemental strand, 30467814 - 30467703
Alignment:
| Q |
72 |
ttagtctttgggaagtcagacattttgttcaatacatcttttatttgctcaggttctgtgagagttaaccttggttttattccaaaccaaataaaagaat |
171 |
Q |
| |
|
|||| |||| ||||||| | |||||||| ||||||||||| ||||| ||||| ||||| | | | ||||||| || ||||||||| |||||||| | |
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|
| T |
30467814 |
ttaggcttttggaagtcgtaaattttgtttaatacatctttaatttggtcaggatctgttatgttcacccttggtgttggtccaaaccagataaaagagt |
30467715 |
T |
|
| Q |
172 |
tctttcctgcat |
183 |
Q |
| |
|
|||||||||||| |
|
|
| T |
30467714 |
tctttcctgcat |
30467703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 30423815 - 30423709
Alignment:
| Q |
77 |
ctttgggaagtcagacattttgttcaatacatcttttatttgctcaggttctgtgagagttaaccttggttttattccaaaccaaataaaagaattcttt |
176 |
Q |
| |
|
|||| ||||||| |||||||||| ||||||||| | ||| ||||||| ||||| | ||| || |||| || ||||||||| |||||||| |||||| |
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|
| T |
30423815 |
cttttggaagtcgtacattttgttaaatacatctctaattagctcaggatctgttaagtttacccgtggtgttggtccaaaccagataaaagagttcttt |
30423716 |
T |
|
| Q |
177 |
cctgcat |
183 |
Q |
| |
|
||||||| |
|
|
| T |
30423715 |
cctgcat |
30423709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 152 - 184
Target Start/End: Complemental strand, 30474861 - 30474829
Alignment:
| Q |
152 |
tccaaaccaaataaaagaattctttcctgcata |
184 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
30474861 |
tccaaaccacataaaagaattctttcctgcata |
30474829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 36 - 205
Target Start/End: Original strand, 41628802 - 41628971
Alignment:
| Q |
36 |
gcaagaccactagcaagtaacttgaaaatcttatagttagtctttgggaagtcagacattttgttcaatacatcttttatttgctcaggttctgtgagag |
135 |
Q |
| |
|
|||||||||||| | ||||||||||||||||||| ||| ||||||| |||||||| || ||||||||||||||| | ||||||||||||||||||||| |
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|
| T |
41628802 |
gcaagaccactaactagtaacttgaaaatcttatgattattctttggaaagtcagagatattgttcaatacatctatgatttgctcaggttctgtgagaa |
41628901 |
T |
|
| Q |
136 |
ttaaccttggttttattccaaaccaaataaaagaattctttcctgcatatgatacacaactctataagaa |
205 |
Q |
| |
|
| | |||||||||| |||||||||| |||||||||||||| ||| |||| || |||||||||||||| |
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|
| T |
41628902 |
tcacccttggttttgttccaaaccacataaaagaattcttccctacataacatttgcaactctataagaa |
41628971 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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