View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_low_15 (Length: 484)
Name: NF8085_low_15
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 333; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 434
Target Start/End: Complemental strand, 52525727 - 52525315
Alignment:
| Q |
19 |
gaaatacctatattttggttaaacgtacaagggcgctacttaaactaatgtaaattgtgcatattagctatactcaacctgaatgaaattagagtggtga |
118 |
Q |
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| T |
52525727 |
gaaatacctatattttggttcaacgtacaagggcgttacttaaactaatgtaaattgtgcatattagccatactcaacctgaatgaaattagagtggtga |
52525628 |
T |
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| Q |
119 |
cttgctttggtaattctaactcttaatatgaatcgttgaaatctccgtattttggagtttgctcccaataagttacgaatactcattttttcacaatatc |
218 |
Q |
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| T |
52525627 |
cttgctttggtaattctaactctt-atatagatcgttgaaatctccgtattttggagtttgctcccaataagttacgaatgctcattttttcacaatatc |
52525529 |
T |
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| Q |
219 |
ttcaaaattcgcatgcaaatgaatgtttgttcagcctcttaannnnnnnnattgcctttgagatttgtccttaggtacaagaacaaaaagaaaaaccatt |
318 |
Q |
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| T |
52525528 |
ttcaaaattcacatgcaaatgaatgtttgttcagcctcttaattttttttattgcctttgagatttgtccttaggtacaagaacaaaaagaaaaaccatt |
52525429 |
T |
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| Q |
319 |
ctataacaaatatttcaaggaataacatttacttgtgattttaatcattactatgtaaaacaattattgacaagattaacttatttcttgattgaactat |
418 |
Q |
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| T |
52525428 |
ctataacaaatatttc--ggaataacatttacttgtgattttaatcattactatgtaaaacaattattgacaagattaacttatttcttgattgaactat |
52525331 |
T |
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| Q |
419 |
ggattaccaaacccgt |
434 |
Q |
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| T |
52525330 |
gaattatcaaatccgt |
52525315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 52527853 - 52527747
Alignment:
| Q |
79 |
atattagctatactcaacctgaatgaaattagagtggtgacttgctttggtaattctaactcttaatatgaatcgttgaaatctccgtattttggagttt |
178 |
Q |
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| T |
52527853 |
atattagccatactcaacgcggatggaattagagtgttgattagctttggtaattccaactcct-atatgaattgttcaaatctccatattatggagtct |
52527755 |
T |
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| Q |
179 |
gctcccaa |
186 |
Q |
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| T |
52527754 |
gctcccaa |
52527747 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 79 - 186
Target Start/End: Complemental strand, 52530175 - 52530069
Alignment:
| Q |
79 |
atattagctatactcaacctgaatgaaattagagtggtgacttgctttggtaattctaactcttaatatgaatcgttgaaatctccgtattttggagttt |
178 |
Q |
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| T |
52530175 |
atattagccatactcaacgcggatggaattagagtgttgattagctttggtaattccaactcct-atatgaattgttcaaatctccatattatggagtct |
52530077 |
T |
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| Q |
179 |
gctcccaa |
186 |
Q |
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| T |
52530076 |
gctcccaa |
52530069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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