View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_low_16 (Length: 465)
Name: NF8085_low_16
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 1e-97; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 31013302 - 31013511
Alignment:
| Q |
1 |
caatgcaaacacgtcaaaatcacttttacacctcttaaaccaattttgtctactcgaaacgcagaaacaaacataggaaaatgaagnnnnnnncagttat |
100 |
Q |
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| T |
31013302 |
caatgcaaacacgtcaaaatcacttttacacctcttaaaccaattttgtctactcgaaacgcagaaacaaacataggcaaatgaagtttttttcagttat |
31013401 |
T |
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| Q |
101 |
agaaattcatgaagatgatccaatatatattatgagttacaaatctaccatttacaaatgtaatttaatagccaacaaggttaattaatataaactttaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
31013402 |
agaaattcatgaagatgatccaatatatattatgagttacaaatctaccatttacaaatgtaatttaatagccaacaaggttaattaatataaaatttaa |
31013501 |
T |
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| Q |
201 |
tgattaaaag |
210 |
Q |
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|||||||||| |
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| T |
31013502 |
tgattaaaag |
31013511 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 317 - 450
Target Start/End: Original strand, 31013617 - 31013750
Alignment:
| Q |
317 |
ggattacctcagtggatggtaaaagaggaggattattatcaccaaagagaaacttgaagaaactttcaagattaagatctctatgatcaatgatggcttg |
416 |
Q |
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| T |
31013617 |
ggattacctcagtggaaggtaaaagaggaggattattatcaccaaagagaaacttgaagaaactttcaagattaagatctctatgatcaatgatggcttg |
31013716 |
T |
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| Q |
417 |
tgtttcttcttctgtgattttctcttctttctgc |
450 |
Q |
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| T |
31013717 |
tgtttcttcttctgtgattttctcttctttctgc |
31013750 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 317 - 393
Target Start/End: Complemental strand, 31707762 - 31707686
Alignment:
| Q |
317 |
ggattacctcagtggatggtaaaagaggaggattattatcaccaaagagaaacttgaagaaactttcaagattaaga |
393 |
Q |
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| T |
31707762 |
ggattaccccagtggaaggtaaaagaggaggattagtatcaccgaagagaaacttgaagaaactttcaagattaaga |
31707686 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 6 - 190
Target Start/End: Complemental strand, 31708058 - 31707873
Alignment:
| Q |
6 |
caaacacgtcaaaatcacttttacacctcttaaac-caattttgtctactcgaaacgcagaaacaaacataggaaaatgaagnnnnnnncagttatagaa |
104 |
Q |
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||||||||||||||||||||||| || ||| ||| ||||||||||| ||| |||| | || ||||||||| ||||||| ||||||||||| |
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| T |
31708058 |
caaacacgtcaaaatcacttttatacgtctaaaaatcaattttgtctgctccaaacataaaaccaaacatagactaatgaagttatttccagttatagaa |
31707959 |
T |
|
| Q |
105 |
attcatgaagatgatccaatatatattatgagttaca-aatctaccatttacaaatgtaatttaatagccaacaaggttaattaata |
190 |
Q |
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| T |
31707958 |
gttcatgatgataacccaatat-tatcatgagtaacacaatctaccatttataaatttaatttaatagccaacaaggttaattaata |
31707873 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 402 - 450
Target Start/End: Complemental strand, 31707650 - 31707602
Alignment:
| Q |
402 |
atcaatgatggcttgtgtttcttcttctgtgattttctcttctttctgc |
450 |
Q |
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| T |
31707650 |
atcaatgattgcttgtgtttcttcttctgtgatcttctcttctttctgc |
31707602 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 6 - 77
Target Start/End: Complemental strand, 39438752 - 39438681
Alignment:
| Q |
6 |
caaacacgtcaaaatcacttttacacctcttaaaccaattttgtctactcgaaacgcagaaacaaacatagg |
77 |
Q |
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|||||| |||||||||| ||||||||||| ||| |||||||| |||||| ||||| ||| |||||||||| |
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| T |
39438752 |
caaacatgtcaaaatcaattttacacctccaaaatcaattttgactactccaaacgtggaaccaaacatagg |
39438681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 334 - 392
Target Start/End: Complemental strand, 35548763 - 35548705
Alignment:
| Q |
334 |
ggtaaaagaggaggattattatcaccaaagagaaacttgaagaaactttcaagattaag |
392 |
Q |
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|||||||||| | | ||| |||||| ||||||||||||||| ||| ||||||||||||| |
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| T |
35548763 |
ggtaaaagagcaaggttactatcactaaagagaaacttgaaaaaagtttcaagattaag |
35548705 |
T |
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