View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8085_low_17 (Length: 464)
Name: NF8085_low_17
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_low_17 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Original strand, 1076862 - 1077304
Alignment:
| Q |
1 |
ccaagtaatcccatttcatgatatccttattgaatccaagaatgttggttccgcttagataccactgatgaagatgctatatcttgtaggttgtcaatac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1076862 |
ccaagtaatcccatttcatgatatccttattgaatccaagaatgttggttccgcttagataccactgatgaagatgctatatcttgtaggttgtcaatac |
1076961 |
T |
|
| Q |
101 |
ccaaatatggaagacacgattaaataaagactttacatatcctaaatcgtgggtccannnnnnnnnnnnnnnnnnngcttaaatttagaagatacaagca |
200 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
1076962 |
ccaaatatggaagacacaattaaataaagactttacatatcctaaatcgtgggtccatttttcttttttt------gcttaaatttagaagatacacgca |
1077055 |
T |
|
| Q |
201 |
attaccatgtgtggctcaaaactcttcagtattggctactatacaattctttcctttacgagtatattttgactattcaaatatatattcccattttttc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1077056 |
attaccatgtgtggctcaaaactcttcagtattggctactatacaattctttcctttacgagtatattttgactattcaaatatatattcccattttttc |
1077155 |
T |
|
| Q |
301 |
tttcctcgttgcctcaaatcattccaaagacccacacttaacgacgtataaacaacgtaaccatgttcttaaattctttcaaaaaggaaaagtataatgc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1077156 |
tttcctcgttgcctcaaatcattccaaagacccacacttaacgacgtataaacaacgtaaccatgttcttaaattctttcaaaaaggaaaagtataatgc |
1077255 |
T |
|
| Q |
401 |
atcatcatcaacactattccatgttggtaagcaacgaatagatcatatt |
449 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1077256 |
atcatcatcaacactattccatgttggtaagcaacgaatagatcatatt |
1077304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University