View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_low_18 (Length: 439)
Name: NF8085_low_18
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 394; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 394; E-Value: 0
Query Start/End: Original strand, 1 - 422
Target Start/End: Original strand, 47237677 - 47238098
Alignment:
| Q |
1 |
agtgtaaaatataaattctcatctctatatttattcctattgtatatcatatatctaaatcaccacctagtataaagaaaactcaaccacacaatagatg |
100 |
Q |
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| T |
47237677 |
agtgtaaaatataaattctcatctctatatttactcctattgtatatcatatatctaaatcaccacctagtataaagaaaactcaaccacacaatagatg |
47237776 |
T |
|
| Q |
101 |
agaacatatcatcacttagtaattaatacaaacaattatcatgtcagcgaagttgaaatcatcatcaccaagtagtttcaataaattgcatgcatagaaa |
200 |
Q |
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| T |
47237777 |
agaacatatcatcacttagtaattaatacaaacaattatcgtgtcagcgaagttgaaatcatcatcaccaagtagtttgaataaattgcatgcatagaaa |
47237876 |
T |
|
| Q |
201 |
actagtgaaactctattgcaagattcagaaaatgcaaccccacaggccacaacatctataaggaataatcacacacaaataaacgaagttaaccacaaga |
300 |
Q |
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| T |
47237877 |
actagtgaaactctattgcaagattcagaaaatgcaaccccacaagccacaacatctataaggattaatcacacacaaataaacgaagttaaccacaaga |
47237976 |
T |
|
| Q |
301 |
atcatgaacaccatacctagacatagacattcgcacactgataatgcattccaattccaaaatttccaaaacattttgatagcataatgaaaataaactt |
400 |
Q |
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| T |
47237977 |
atcatgaacaccatacctagacatagacattcgcacactgataatacattccaatttcaaaatttccaaaacattttgatagcataatgaaaataaactt |
47238076 |
T |
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| Q |
401 |
taacacaaatgacgcaaattaa |
422 |
Q |
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| T |
47238077 |
taacacaaatgacgcaaattaa |
47238098 |
T |
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