View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_low_19 (Length: 439)
Name: NF8085_low_19
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_low_19 |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 3e-86; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 3e-86
Query Start/End: Original strand, 264 - 429
Target Start/End: Original strand, 52349001 - 52349166
Alignment:
| Q |
264 |
atactcaatgtgcaatttttacggtgaaaacaattgcaaactctcatgacatacaactatactcaagcatccgatacaccaaaaagactcaagttgattt |
363 |
Q |
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| T |
52349001 |
atactcaatgtgcaatttttacggtgaaaacaattgcaaactctcatgacatacagctatactcaagcatccgatacaccaaaaagactcaagttgattt |
52349100 |
T |
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| Q |
364 |
gctgaagaaaactcaaattaactctccatatttataataacattttacctcttttttcttctcact |
429 |
Q |
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| T |
52349101 |
gctgaagaaaactcaaattaactctccatatttataataacattttacctcttttttcttctcact |
52349166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 126; E-Value: 8e-65
Query Start/End: Original strand, 19 - 206
Target Start/End: Original strand, 52348752 - 52348943
Alignment:
| Q |
19 |
ttatactcttcc-gctcttgatagtactgtgtataaataatatacatatacaataatgtacannnnnnnnnc--ctattatgagaactaaagaatataaa |
115 |
Q |
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| T |
52348752 |
ttatactcttcctgctcttgatagtactgtgtataaataatatacatatacaataatgtacatttttttttttgctattatgagaactaaagaatataaa |
52348851 |
T |
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| Q |
116 |
acgcaatagaatagtaagagcaaggcagaac-aaaatttgtggtcattttcattttctctataacaactatatctccaagaattttttaggc |
206 |
Q |
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| T |
52348852 |
acgcaatagaatagtaagagcagggcagaacaaaaatttgtggtcattttcattttctctataacaactatatctccgagaattttttaggc |
52348943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 371 - 429
Target Start/End: Original strand, 35875655 - 35875713
Alignment:
| Q |
371 |
aaaactcaaattaactctccatatttataataacattttacctcttttttcttctcact |
429 |
Q |
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| T |
35875655 |
aaaactcaaattaactttccatttttataataacaatctacctatttcttcttcacact |
35875713 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 371 - 403
Target Start/End: Original strand, 36071576 - 36071608
Alignment:
| Q |
371 |
aaaactcaaattaactctccatatttataataa |
403 |
Q |
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| T |
36071576 |
aaaactcaaattaactcttcatatttataataa |
36071608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 402
Target Start/End: Complemental strand, 15230424 - 15230388
Alignment:
| Q |
366 |
tgaagaaaactcaaattaactctccatatttataata |
402 |
Q |
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|||| |||||||||| ||||||||||||||||||||| |
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| T |
15230424 |
tgaaaaaaactcaaactaactctccatatttataata |
15230388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 368 - 404
Target Start/End: Complemental strand, 8161365 - 8161329
Alignment:
| Q |
368 |
aagaaaactcaaattaactctccatatttataataac |
404 |
Q |
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| T |
8161365 |
aagaaaattcaaattaactcttcatatttataataac |
8161329 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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