View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8085_low_2 (Length: 844)
Name: NF8085_low_2
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 758; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 758; E-Value: 0
Query Start/End: Original strand, 18 - 837
Target Start/End: Original strand, 44630980 - 44631793
Alignment:
| Q |
18 |
gtaatctgcttcacttcttaattattatgcatgaatgtaccagttaaacaagaaatcctatagtagaggtttctaggatttgtattggcatgaaatatcg |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44630980 |
gtaatctgcttcacttcttaattattatgcatgaatgtaccagttaaacaagatatcctatagtagaggtttctaggatttgtattggcatgaaatatcg |
44631079 |
T |
|
| Q |
118 |
atctttctgttgttgaggactatgtcgtgacgtgttcgatatacttttagtgtttattttacaactagagtgtgtccaagaattggaggttaccaggttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44631080 |
atctttctgttgttgaggactatgtcgtgacgtgttcgatatacttttagtgtttattttacaactagagtgtgtccaagaattggaggttaccaggttt |
44631179 |
T |
|
| Q |
218 |
ccgtgaagacttctgcctgtatgtggcttgtatataaatgtttggtcgaaatcgtttgaatttcttgcatgatataattctcatactcaaactttgtatc |
317 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44631180 |
ccgtgaagacttctgcctatatgtggcttgtatataaatgtttggtcgaaatcgtttgaatttcttgcatgatataattctcatactcaaactttgtatc |
44631279 |
T |
|
| Q |
318 |
ctgtatcttgttgagttgatgatgtgctgatgtgatttcaaacattgcagttaaaagcaaatggggaatcttttgtgttgcgtgcaagttgatcagtcta |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44631280 |
ctgtatcttgttgagttgatgatgtgctgatgtgatttcaaacattgcagttaaaagcaaatggggaatcttttgtgttgcgtgcaagttgatcagtcta |
44631379 |
T |
|
| Q |
418 |
cggtggctatgagagaaggttttggaaaatttgaagaggtgcttcagccaggatgccattgcatgccatggttccttggaaaacgaattgccggtcatct |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44631380 |
cggtggctatgagagaaggttttggaaaatttgaagaggtgcttcagccaggatgccattgcatgccatggttccttggaaaacgaattgccggtcatct |
44631479 |
T |
|
| Q |
518 |
ctcccttcggctacaacaattggatataaaatgtgagaccaagacaaagg-tttgttactgtatcaaactttaattcaaccaaatcttcatgtcattcct |
616 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44631480 |
ctcccttcggctacaacaattggatataaaatgtgagaccaagacaaaggttttgttactgtctcaaactttaattcaaccaaatcttcatgtcattcct |
44631579 |
T |
|
| Q |
617 |
tatgcataccaataagtcaataacatatatactttcgctctggctaggattttattttcatttttataattaggtgtcatcctggtgctatgttattttg |
716 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
44631580 |
tatgcataccaataagtcaataacatatatactttcgctctggctaggattttattttcattttt---attaggtgtcatcctggtgctatgttattttg |
44631676 |
T |
|
| Q |
717 |
atatctatatgttttcttaactatggttatctctttcactatgaattggtatcaggctactttcaatacttcatatttatgcataacatgacactctgta |
816 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
44631677 |
atttctatatgttttcttaactatggttatctctttcact----attggtatcaggctactttcaatacttcatatttatgcataacatgacactatgta |
44631772 |
T |
|
| Q |
817 |
catttctcatatattcttcga |
837 |
Q |
| |
|
||||||||||||||| ||||| |
|
|
| T |
44631773 |
catttctcatatatttttcga |
44631793 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 51 - 615
Target Start/End: Complemental strand, 44637832 - 44637261
Alignment:
| Q |
51 |
aatgtaccagttaaacaagaaatcctatagtagaggtttctaggatttgtattggcatg-aaatatcgatctttctgttgttgaggactatgtcgtgacg |
149 |
Q |
| |
|
|||||||| ||| ||||| |||| ||||||||||||||||||||||||||| ||||||| ||| || | | | || ||| |||||||||||| ||| | |
|
|
| T |
44637832 |
aatgtacccgtttaacaataaatactatagtagaggtttctaggatttgtactggcatgtaaacatggcacct-ctcctgtcgaggactatgtcatgatg |
44637734 |
T |
|
| Q |
150 |
tg-ttcgatatacttttagtgtttattttacaactagagtgtgtccaagaattggaggttaccaggtttccgtgaagacttctgcctgtatgtggcttgt |
248 |
Q |
| |
|
| |||||||| ||||| |||||||| ||| | | || ||||||||||||||||||||||| ||| |||| |||||||||||| || || || ||| || |
|
|
| T |
44637733 |
gggttcgatatgtttttattgtttattataccattggaatgtgtccaagaattggaggttacaaggattccatgaagacttctgtctatacgtagctcgt |
44637634 |
T |
|
| Q |
249 |
atataaatgtttggtcgaaatcgtttgaatttcttgcat-------------gatataattctcatactcaaactttgtatcctgtatcttgttgagttg |
335 |
Q |
| |
|
||| | ||||||||||||||| |||||||||||||||| ||| |||||||||| |||| |||||||||| ||| ||| |
|
|
| T |
44637633 |
ataccagtgtttggtcgaaatcatttgaatttcttgcattccaatctagcatgatgtaattctcatcctcatactttgtatc---tatattg-------- |
44637545 |
T |
|
| Q |
336 |
atgatgtgctgatgtgatttcaaacattgcagttaaaagcaaatggggaatcttttgtgttgcgtgcaagttgatcagtctacggtggctatgagagaag |
435 |
Q |
| |
|
||||||||||||||| ||| ||| ||||||||||||| |||||||||||||||||||||| |||||||||||||| ||||| |||||||||| ||| | |
|
|
| T |
44637544 |
atgatgtgctgatgtattttgaaatgttgcagttaaaagaaaatggggaatcttttgtgttgtgtgcaagttgatcaatctacagtggctatgaaagagg |
44637445 |
T |
|
| Q |
436 |
gttttggaaaatttgaagaggtgcttcagccaggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctcccttcggctacaaca |
535 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || |
|
|
| T |
44637444 |
gttttggaaaatttgaagaggtgcttcagccaggatgccattgcatgccatggttccttggaaaacgaattgctggtcatctctctcttcggctacagca |
44637345 |
T |
|
| Q |
536 |
attggatataaaatgtgagaccaagacaaag----gtttgttactgtatcaaactttaattcaaccaaatcttcatgtcattcc |
615 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||| | |||||| |||| ||| ||||||||| |||||||| |
|
|
| T |
44637344 |
attggatataaaatgtgagaccaagacaaaggttcgtttgttactgtctaaaacttcaatttaacgaaatcttcacgtcattcc |
44637261 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 59 - 821
Target Start/End: Original strand, 44681524 - 44682255
Alignment:
| Q |
59 |
agttaaacaagaaatcctatagtagaggtttctaggatttgtattggcatgaaatatc-gatctttctgttgttgaggactatgtcgtgacgtgtt-cga |
156 |
Q |
| |
|
|||||||||||||| |||||| |||||||||| ||||| ||||||||||||| || ||| | ||| ||||||||||||||| ||||| |||| ||| |
|
|
| T |
44681524 |
agttaaacaagaaaatctatagcagaggtttctgagatttttattggcatgaaaaatttgatttctctcttgttgaggactatgccgtgatatgtttcga |
44681623 |
T |
|
| Q |
157 |
tatacttttagtgtttattttacaactagagtgtgtccaagaattggaggttaccaggtttccgtgaagacttctgcctg-------tatgtggcttgta |
249 |
Q |
| |
|
|||| || || ||||| |||||| | | ||||| | ||| ||||||||||| ||| || | ||||| |||||| || ||||||||| | |
|
|
| T |
44681624 |
tatatttgtactgtttgttttaccattgctatgtgttcgagagttggaggttactaggattgcatgaagtcttctgtctaatgtctatatgtggctgctt |
44681723 |
T |
|
| Q |
250 |
tataaatgtttggtcgaaatcgtttgaatttcttgcatgatataattctcatactcaaactttgtatcctgtatcttgttgagttgatgatgtgctgatg |
349 |
Q |
| |
|
|| || ||||| ||| ||| |||||| ||||||||||||| ||||||||| |||| | ||||||| |||||| ||||||||||||||| |
|
|
| T |
44681724 |
tagaagtgtttattcggaatgatttgaaattcttgcatgatacaattctcatcctcataatttgtattctgtat----------tgatgatgtgctgata |
44681813 |
T |
|
| Q |
350 |
tgatttcaaacattgcagttaaaagcaaatggggaatcttttgtgttgcgtgcaagttgatcagtctacggtggctatgagagaaggttttggaaaattt |
449 |
Q |
| |
|
| |||||| ||||||||| ||||| |||||||||||||| ||||||| |||||||||||||| ||| |||||||||| ||||||||||||||||||| |
|
|
| T |
44681814 |
tattttcaagcattgcagtgaaaagaaaatggggaatcttgtgtgttgtgtgcaagttgatcaatctcaagtggctatgaaagaaggttttggaaaattt |
44681913 |
T |
|
| Q |
450 |
gaagaggtgcttcagccaggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctcccttcggctacaacaattggatataaaat |
549 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||| || | |
|
|
| T |
44681914 |
gaaaaggtgcttcagccgggatgccattgcatgccatggttccttggaaaacgaattgctggtcatctctctcttcgggtacaacaattggatatcaagt |
44682013 |
T |
|
| Q |
550 |
gtgagaccaagacaaaggtttgttactgtatcaaactttaattcaaccaaatcttcatgtcattccttatgcataccaataagtcaataacatatatact |
649 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||| | |||| |||||||||||||||||||||| |||| || ||||||||||| ||||| |
|
|
| T |
44682014 |
gtgagacaaagacaaaggtttgttactgtctcaaacatcaattaaaccaaatcttcatgtcattcc--atgctta--------tcaataacataaatact |
44682103 |
T |
|
| Q |
650 |
ttcgctctggctaggattttattttcatttttataattaggtgtcatcctggtgctatgttattttgatatctatatgttttcttaactatggttatctc |
749 |
Q |
| |
|
||| | |||||||||||| || |||| |||||||||||| |||||||| |||||| ||| | ||||||||||| |||||||||||| |
|
|
| T |
44682104 |
ttctttttggctaggatttgttt-------------ttagttgtcatcctggtactatgttaatttgatttctttgtgttttcttaaatatggttatctc |
44682190 |
T |
|
| Q |
750 |
tttcactatgaattggtatcaggctactttcaatacttcatatttatgcataacatgacactctgtacattt |
821 |
Q |
| |
|
||| |||| ||||||||| ||||||| |||||||||| ||||||||||| |||||| ||| ||||| |
|
|
| T |
44682191 |
tttaacta-------gtatcaggccactttcactacttcatatgtatgcataacaagacactttgtgcattt |
44682255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 170; E-Value: 9e-91
Query Start/End: Original strand, 333 - 796
Target Start/End: Original strand, 44652783 - 44653216
Alignment:
| Q |
333 |
ttgatgatgtgctgatgtgatttcaaacattgcagttaaaagcaaatggggaatcttttgtgttgcgtgcaagttgatcagtctacggtggctatgagag |
432 |
Q |
| |
|
|||||||||||||||| | ||| || ||||||||| ||||| |||||||||||||| ||||||| |||||||||||||| ||| |||||||||| || |
|
|
| T |
44652783 |
ttgatgatgtgctgatatattttgaagcattgcagtgaaaagaaaatggggaatcttgtgtgttgtgtgcaagttgatcaatctcaagtggctatgaaag |
44652882 |
T |
|
| Q |
433 |
aaggttttggaaaatttgaagaggtgcttcagccaggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctcccttcggctaca |
532 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||| |||| |
|
|
| T |
44652883 |
aaggttttggaaaatttgaaaaggtgcttcagccgggatgccattgcatgccatggttccttggaaaaagaattgctggtcatctctctcttcgggtaca |
44652982 |
T |
|
| Q |
533 |
acaattggatataaaatgtgagaccaagacaaaggtttgttactgtatcaaactttaattcaaccaaatcttcatgtcattccttatgcataccaataag |
632 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| ||||| || |||||| | |||| |||||| | ||||||||||||| |||| ||| |
|
|
| T |
44652983 |
acaattggatatcaaatgtgagaccaagacaaaggttcgttacggtctcaaacatcaattaaaccaagtgttcatgtcattcc--atgcttac------- |
44653073 |
T |
|
| Q |
633 |
tcaataacatatatactttcgctctggctaggattttattttcatttttataattaggtgtcatcctggtgctatgttattttgatatctatatgttttc |
732 |
Q |
| |
|
|||||||||| |||||||| | |||||||||||| || |||| ||||||||||||||||||||| |||||| || | ||||||| |
|
|
| T |
44653074 |
-caataacataaatactttctttttggctaggatttgttt-------------ttagttgtcatcctggtgctatgttaatttgattcctttgtgttttc |
44653159 |
T |
|
| Q |
733 |
ttaactatggttatctctttcactatgaattggtatcaggctactttcaatacttcatatttat |
796 |
Q |
| |
|
|||| ||||||||||||||| |||| ||||||||| ||||||||||||||||| |||| |
|
|
| T |
44653160 |
ttaaatatggttatctcttttacta-------gtatcaggccactttcaatacttcataattat |
44653216 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 149; E-Value: 3e-78
Query Start/End: Original strand, 364 - 753
Target Start/End: Original strand, 44691502 - 44691876
Alignment:
| Q |
364 |
gcagttaaaagcaaatggggaatcttttgtgttgcgtgcaagttgatcagtctacggtggctatgagagaaggttttggaaaatttgaagaggtgcttca |
463 |
Q |
| |
|
||||| ||||| ||||||||||| || |||||||||||||||||||||| ||| |||||||||| |||||||||||| ||||||||| |||||||||| |
|
|
| T |
44691502 |
gcagtgaaaagaaaatggggaatattgtgtgttgcgtgcaagttgatcaatctcaagtggctatgaaagaaggttttgggaaatttgaaaaggtgcttca |
44691601 |
T |
|
| Q |
464 |
gccaggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctcccttcggctacaacaattggatataaaatgtgagaccaagaca |
563 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||||| |||||||||||||||||| |
|
|
| T |
44691602 |
tccgggatgccattgcatgccatggttccttggaaaacgaattgccggtcatctctctcttcgggttcaacaattggatatcaaatgtgagaccaagaca |
44691701 |
T |
|
| Q |
564 |
aa----ggtttgttactgtatcaaactttaattcaaccaaatcttcatgtcattccttatgcataccaataagtcaataacat--atatactttcgctct |
657 |
Q |
| |
|
|| ||||||||||| | | |||||| |||| |||||||||||||| |||||| |||| || ||||| |||| |||||||||| || | |
|
|
| T |
44691702 |
aaggctggtttgttactttctaaaacttcaattataccaaatcttcatgccattcc--atgctta--------tcaatcacatggatatactttctcttt |
44691791 |
T |
|
| Q |
658 |
ggctaggattttattttcatttttataattaggtgtcatcctggtgctatgttattttgatatctatatgttttcttaactatggttatctctttc |
753 |
Q |
| |
|
||| |||| | |||||| ||||||| |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
44691792 |
ggccagga--------taattttt---attaggtatcatcctggtgctatgttattttgattcctatatattttcttaactatggttatctctttc |
44691876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 75 - 179
Target Start/End: Original strand, 44652524 - 44652629
Alignment:
| Q |
75 |
ctatagtagaggtttctaggatttgtattggcatgaaatatcgatctttctgttgttgaggactatgtcgtgacgtg-ttcgatatacttttagtgttta |
173 |
Q |
| |
|
|||||| ||||||||||| |||| ||||||||||||| | ||| | ||| ||||||||||||||||||||| || ||||||||| || || ||||| |
|
|
| T |
44652524 |
ctatagcagaggtttctaacatttttattggcatgaaaatttgatttctctcttgttgaggactatgtcgtgatatgtttcgatatatttgtactgtttg |
44652623 |
T |
|
| Q |
174 |
ttttac |
179 |
Q |
| |
|
|||||| |
|
|
| T |
44652624 |
ttttac |
44652629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 240 - 274
Target Start/End: Original strand, 44691419 - 44691453
Alignment:
| Q |
240 |
gtggcttgtatataaatgtttggtcgaaatcgttt |
274 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |
|
|
| T |
44691419 |
gtggcttgtatataaatgtttggtagaaatcgttt |
44691453 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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