View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8085_low_22 (Length: 415)
Name: NF8085_low_22
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_low_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 322; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 14 - 391
Target Start/End: Complemental strand, 34573270 - 34572889
Alignment:
| Q |
14 |
atgaactaaatgttgaatatataagggatgtggcttatttacctaataa-----ggttttgattaatgatatgatatctaaatctcttaagggtctttga |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34573270 |
atgaactaaatgttgaatatataagggatgtggcttatttacctaataaaataaggttttgattaatgatatgatatctaaatctcttaagggtctttga |
34573171 |
T |
|
| Q |
109 |
cgttcaacttttgannnnnnnatttcttttcttctgttggctcaacaaaatattcatctaaaatggatccatagccactagatttttatcatagtaccgt |
208 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34573170 |
cgttcaacttttgatttttttatttcttttcttctgttggctcaacaaaatattcatctaaaatggatccatagccactagatttttatcatagtaccgt |
34573071 |
T |
|
| Q |
209 |
tccgacatagcaaagttgttctccataagacttgtaaaacattgattgcactttatgaaattgaacttgatgtcatcttgattgaacctggctcttgata |
308 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
34573070 |
tccgacatagcaaagttgttctccatcagacttgtaaaacattgattgcactttatgaaattgaacttgatgtcatcttgattgaacctggatcttgata |
34572971 |
T |
|
| Q |
309 |
ataggttttggcaatttaaacagaatactgaactcccaaacatgattttaatttagcagcacaaaagctttgcatatggaact |
391 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34572970 |
ctagg-tttggcaatttaaacagaatactgaactcccaaacatgattttaatttagcagcacaaaagctttgcatatggaact |
34572889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 322 - 395
Target Start/End: Complemental strand, 38494180 - 38494105
Alignment:
| Q |
322 |
atttaaacagaatact--gaactcccaaacatgattttaatttagcagcacaaaagctttgcatatggaactcgtt |
395 |
Q |
| |
|
|||||||||||| ||| |||| | |||||| |||||||||||||| ||||||||||||| |||||||||||||| |
|
|
| T |
38494180 |
atttaaacagaacactatgaacacacaaacaaaattttaatttagcatcacaaaagctttgtatatggaactcgtt |
38494105 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 358 - 392
Target Start/End: Complemental strand, 38499513 - 38499479
Alignment:
| Q |
358 |
aatttagcagcacaaaagctttgcatatggaactc |
392 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
38499513 |
aatttagcagcacaaaagctttgcatatggaactc |
38499479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 241 - 305
Target Start/End: Complemental strand, 38474240 - 38474176
Alignment:
| Q |
241 |
tgtaaaacattgattgcactttatgaaattgaacttgatgtcatcttgattgaacctggctcttg |
305 |
Q |
| |
|
||||||| |||||||||||| ||||| ||||| || |||| ||||||||| ||||||||||||| |
|
|
| T |
38474240 |
tgtaaaatgttgattgcacttgatgaatttgaagttaatgttatcttgattcaacctggctcttg |
38474176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University