View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_low_23 (Length: 410)
Name: NF8085_low_23
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 16 - 399
Target Start/End: Original strand, 52520516 - 52520896
Alignment:
| Q |
16 |
aatataaggtcatttatgactttgtcctcccaattttgcatttttaattataatgataatataatataatatttctgaaggtgtgaaacgaaagggacct |
115 |
Q |
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| T |
52520516 |
aatataaggtcatttatgactttgtcctcccaattttgtatttttaattataattataata-------atatttcagaaggtgtgaaacgaaagggacct |
52520608 |
T |
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| Q |
116 |
ctcgctttcatcgtccttttgtatcgtcttgcggagaaccgaaaatcccgagccttacaatattttccttctgttttcatctannnnnnnnnnnnnnnnc |
215 |
Q |
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| T |
52520609 |
ctcgctttcatcgtccttttgtatcgtcttgcggagaaccgaaaatcccgagccttacaatattttccttccgttttcatctatttttatttttattttc |
52520708 |
T |
|
| Q |
216 |
aacaacccaaaatatggataacaaattaatggcttaaattattaagtgcattagtggtagaatttagttaa----taaattattatgactaacccaattt |
311 |
Q |
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| T |
52520709 |
aacaacccaaaatatggataacaaattaatggcttaaattattaagtgcattagtggtagaatttagttaattaataaattattatgactaacccaattt |
52520808 |
T |
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| Q |
312 |
tggttgaatgggtttattcactttcctaacttgattgaatcgtttactactaaatatgtttaggcttatcatcgtgtttgttttaatg |
399 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||| |
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| T |
52520809 |
tggttgaatgggtttattcactttcctaacttgattggatcgtttactactaaatatgtttacgtttatcatcgtgtttgttttaatg |
52520896 |
T |
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