View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_low_28 (Length: 372)
Name: NF8085_low_28
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_low_28 |
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Alignment Details
Target: chr6 (Bit Score: 151; Significance: 8e-80; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 74 - 284
Target Start/End: Original strand, 13225685 - 13225884
Alignment:
| Q |
74 |
ttctgaatttacatcaacagaggtatatgtttctttgcttcatcattttactatagcaatttacaaatcttttcatactgtatttaattaaggatcatgt |
173 |
Q |
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| T |
13225685 |
ttctgaatttacatcaacagaggtatatgtttttttgcttcatcattttactatagcaatttacaaatcttttcttactgtatt---ttaaggatcatgt |
13225781 |
T |
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| Q |
174 |
tatgtatattattagacgttgttttatgttgaagtacaatttatttgacactataaaagtttgcaattttcttctttacttttgcattatatgttttatg |
273 |
Q |
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| T |
13225782 |
tatgta---tattagacattgttttatgt-----tacaatttatttgacactataaaagtttgcaattttcttctttacttttgcattatatgttttatg |
13225873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 13225558 - 13225599
Alignment:
| Q |
1 |
aagctgagatatatgcaatatagaatgatataggcatatgag |
42 |
Q |
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| T |
13225558 |
aagctgagatatatgcaatatagaatgatataggcatatgag |
13225599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 43 - 80
Target Start/End: Original strand, 13225631 - 13225668
Alignment:
| Q |
43 |
aaaaactatcaaaattgtatgagaacatttcttctgaa |
80 |
Q |
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| T |
13225631 |
aaaaactatcaaaattgtatgagaaaatttcttctgaa |
13225668 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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