View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8085_low_30 (Length: 363)
Name: NF8085_low_30
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_low_30 |
 | |
|
| [»] scaffold0083 (1 HSPs) |
| | |
|
| [»] scaffold0002 (3 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 276; Significance: 1e-154; HSPs: 28)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 10581207 - 10580860
Alignment:
| Q |
9 |
gaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaa---------gtccactctgttatgtctacctttgaacggagaagtcctcc |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
10581207 |
gaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaaaaaattgaagtccactttgttatgtctacctttgaagggagaagtcctcc |
10581108 |
T |
|
| Q |
100 |
tagtgtttttgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactt |
199 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10581107 |
tagtgttttagcagctattggcaatcccccacaccttcttgcaatcttcctgccaatttcttcaagggctgtatttgtactatggtgaaactcatcactt |
10581008 |
T |
|
| Q |
200 |
tccaatgcatagtttgagagtaaagaccagcaatcttcatttgatagaggttctaaattatgtacagcaaacacgcgtgccatctttgtaactttttgtt |
299 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| |
|
|
| T |
10581007 |
cccaatgcatagtttgagagtaaagaccaacaatcttcatttgatagaggttctaaattatgtacagcaaacatgtgtgccatctttgtaactttttgtt |
10580908 |
T |
|
| Q |
300 |
ggcgcgttgttataatcaccatgcttccaggttttccattaatgaagg |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10580907 |
ggcgcgttgttataatcaccatgcttccaggttttccattaatgaagg |
10580860 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 347
Target Start/End: Original strand, 10363270 - 10363608
Alignment:
| Q |
9 |
gaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10363270 |
gaagaatattatcatttcgcaagttccatatgttgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttt |
10363369 |
T |
|
| Q |
109 |
tgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgca |
208 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||| || ||| |||| |
|
|
| T |
10363370 |
agcagcaattggcaatcctccacactttcttgcaatcttcctgcctatttcttcaagggttgtgtttgtactattgtgaaactcatcatttcccagtgca |
10363469 |
T |
|
| Q |
209 |
tagtttgagagtaaagaccagcaatcttcatttgatagaggttctaaattatgtacagcaaacacgcgtgccatctttgtaactttttgttggcgcgttg |
308 |
Q |
| |
|
| ||||||||||||| ||| |||||||||||||||||| | ||||| ||||||| || ||| | |||||| || | ||||||| ||||||||||| |
|
|
| T |
10363470 |
tgctttgagagtaaagtccaacaatcttcatttgatagaagatctaatttatgtataggaaatgtgtgtgccacctcagctactttttcttggcgcgttg |
10363569 |
T |
|
| Q |
309 |
ttataatcaccatgcttccaggttttccattaatgaagg |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10363570 |
ttataatcaccatgcttccaggttttccatcaatgaagg |
10363608 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 10664123 - 10663785
Alignment:
| Q |
9 |
gaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttt |
108 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
10664123 |
gaagaatattatcattgcgcaagttccatatgttgctgttcaaaattgaagtccactctgttatgtctacctttgaacgtagaagtcctcctaatgtttt |
10664024 |
T |
|
| Q |
109 |
tgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| ||||||||||||||| || ||| |||||||| |
|
|
| T |
10664023 |
agcagctattggcaatcctccacactttcttgcaatcttcctgcctgtttcttcaagggttgtgtttgaactatggtgaaactcgtcgcttcccaatgca |
10663924 |
T |
|
| Q |
209 |
tagtttgagagtaaagaccagcaatcttcatttgatagaggttctaaattatgtacagcaaacacgcgtgccatctttgtaactttttgttggcgcgttg |
308 |
Q |
| |
|
| ||||| ||||| ||||| |||||||||||||||||| ||||||| ||||||| || ||| | |||||| || | ||||||||||| |||||||| |
|
|
| T |
10663923 |
tgctttgaaagtaaggaccaacaatcttcatttgatagaagttctaatttatgtataggaaatgtgtgtgccacctcagcaactttttgttcgcgcgttg |
10663824 |
T |
|
| Q |
309 |
ttataatcaccatgcttccaggttttccattaatgaagg |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10663823 |
ttataatcaccatgcttccaggttttccatcaatgaagg |
10663785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 10127525 - 10127187
Alignment:
| Q |
9 |
gaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttt |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
10127525 |
gaagaatattatcatttcgcaagttccatatgttgttgttcaaaattgaagtccactctgttatgtctacctttgaacgtagaagtcctcctagtgtttt |
10127426 |
T |
|
| Q |
109 |
tgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||| |||| |||||||||| |||||||| |
|
|
| T |
10127425 |
agcagctattggcaatcctccacactttcttgcaatcttcctgcctgtttcttcaagggctgtatttgtattatgctgaatctcatcacttcccaatgca |
10127326 |
T |
|
| Q |
209 |
tagtttgagagtaaagaccagcaatcttcatttgatagaggttctaaattatgtacagcaaacacgcgtgccatctttgtaactttttgttggcgcgttg |
308 |
Q |
| |
|
| ||||| ||||||||||| |||||||||| |||||| || || | ||||| || ||| |||||||| || | |||||||||||||||||||| |
|
|
| T |
10127325 |
tgctttgatagtaaagaccaacaatcttcatctgatagtacttttagttcatgtataggaaatgtgcgtgccacctcagcaactttttgttggcgcgttg |
10127226 |
T |
|
| Q |
309 |
ttataatcaccatgcttccaggttttccattaatgaagg |
347 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10127225 |
ttataatcaccatgcttccaggttttccattaatgaagg |
10127187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 9839458 - 9839120
Alignment:
| Q |
9 |
gaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttt |
108 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
9839458 |
gaagaatattatcatttgataagttccatatgtcgctgttcaaaattgaagtccactcacttatgtctacctttgaacgtagaagtcctcctattgtttt |
9839359 |
T |
|
| Q |
109 |
tgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| |||||||||||||||||||||| |||||||| |
|
|
| T |
9839358 |
agcagctattggcaatcctccacactttcttgcaatcttcctgcctatttcttcaagggctgtgtttgaactatggtgaaactcatcacttcccaatgca |
9839259 |
T |
|
| Q |
209 |
tagtttgagagtaaagaccagcaatcttcatttgatagaggttctaaattatgtacagcaaacacgcgtgccatctttgtaactttttgttggcgcgttg |
308 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||| | ||||| ||||||| | ||| | |||||| || | |||||||||||||||||||| |
|
|
| T |
9839258 |
tgctttgagagtaaagaccaacaatcttcatttgatagaagatctaatttatgtattggaaatgtgtgtgccacctcagcaactttttgttggcgcgttg |
9839159 |
T |
|
| Q |
309 |
ttataatcaccatgcttccaggttttccattaatgaagg |
347 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
9839158 |
ttataatcaccatgcttccgggttttccatcaatgaagg |
9839120 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 9850336 - 9849998
Alignment:
| Q |
9 |
gaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttt |
108 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
9850336 |
gaagaatattatcatttgataagttccatatgtcactgttcaaaattgaagtccactcacttatgtctacctttgaacgtagaagtcctcctattgtttt |
9850237 |
T |
|
| Q |
109 |
tgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| |||| |||||||||||||||||||||| |||||||| |
|
|
| T |
9850236 |
agcagctattggcaatcctccacactttcttgcaatcttcctgcctatttcttcaagggctgtgtttgaactatggtgaaactcatcacttcccaatgca |
9850137 |
T |
|
| Q |
209 |
tagtttgagagtaaagaccagcaatcttcatttgatagaggttctaaattatgtacagcaaacacgcgtgccatctttgtaactttttgttggcgcgttg |
308 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||| | ||||| ||||||| | ||| | |||||| || | ||||||||||||||| |||| |
|
|
| T |
9850136 |
tgctttgagagtaaagaccaacaatcttcatttgatagaagatctaatttatgtattggaaatgtgtgtgccacctcagcaactttttgttggcgtgttg |
9850037 |
T |
|
| Q |
309 |
ttataatcaccatgcttccaggttttccattaatgaagg |
347 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
9850036 |
ttataatcaccatgcttccgggttttccatcaatgaagg |
9849998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 9 - 344
Target Start/End: Complemental strand, 10527955 - 10527620
Alignment:
| Q |
9 |
gaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttt |
108 |
Q |
| |
|
||||||||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
10527955 |
gaagaatattatcatttgataagttccatacgttgctgttcaaaattgaagtccactctgttatgtctacctttgaacgtagaagtcctcctattgtttt |
10527856 |
T |
|
| Q |
109 |
tgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgca |
208 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||||| |||||||| |
|
|
| T |
10527855 |
agcagctattggcaatcctccatactttcttgcaatctttctgcctatttcttcaagggttgtgtttgtactattgtgaaactcatcacttcccaatgca |
10527756 |
T |
|
| Q |
209 |
tagtttgagagtaaagaccagcaatcttcatttgatagaggttctaaattatgtacagcaaacacgcgtgccatctttgtaactttttgttggcgcgttg |
308 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||| | ||| || ||||||| || ||| |||||||| || | ||||||| ||||| | |||| |
|
|
| T |
10527755 |
tgctttgagagtaaagaccaacaatcttcatttgataaaagttttagtttatgtataggaaatgtgcgtgccacctcagcaacttttcgttggtgggttg |
10527656 |
T |
|
| Q |
309 |
ttataatcaccatgcttccaggttttccattaatga |
344 |
Q |
| |
|
||||||||||||| |||||||||||||||| ||||| |
|
|
| T |
10527655 |
ttataatcaccatacttccaggttttccatcaatga |
10527620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 10089387 - 10089049
Alignment:
| Q |
9 |
gaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttt |
108 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
10089387 |
gaagaatattatcatttgataagttccatatgtcgctgttcaaaattgaagtccactctgttatttctacctttgaacgtagaagtcctcctagtgtttt |
10089288 |
T |
|
| Q |
109 |
tgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgca |
208 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||| |||||||||||| |||||| |||| | |||||||| |
|
|
| T |
10089287 |
ggcagctattggcaatcctccacacttccttgcaatcttccggccaattgcttcaagggttgtgtttgtactatggggaaacttatcattgcccaatgca |
10089188 |
T |
|
| Q |
209 |
tagtttgagagtaaagaccagcaatcttcatttgatagaggttctaaattatgtacagcaaacacgcgtgccatctttgtaactttttgttggcgcgttg |
308 |
Q |
| |
|
| ||||||||||||| ||| |||||||||||||| ||| ||||||| ||||||| || ||| | |||||| || | ||||||| ||||||||||| |
|
|
| T |
10089187 |
tgctttgagagtaaagtccaacaatcttcatttgacagaagttctaatttatgtataggaaatgtgtgtgccacctcagctactttttcttggcgcgttg |
10089088 |
T |
|
| Q |
309 |
ttataatcaccatgcttccaggttttccattaatgaagg |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10089087 |
ttataatcaccatgcttccaggttttccatcaatgaagg |
10089049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 9 - 347
Target Start/End: Original strand, 10433516 - 10433854
Alignment:
| Q |
9 |
gaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttt |
108 |
Q |
| |
|
||||||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||||| |||||| |
|
|
| T |
10433516 |
gaagaatattatcatttgataagttccatacgttgctgttcaaaattgaagtccactctgttatatctacctttgaacgtaaaagtcctcctattgtttt |
10433615 |
T |
|
| Q |
109 |
tgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgca |
208 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||| | |||||||||||||||| |||||||| |
|
|
| T |
10433616 |
agcagcaattggcaatcctccacactttcttgcaatctccctgcctatttcttcaagggttgtgtttgtattgaggtgaaactcatcactgcccaatgca |
10433715 |
T |
|
| Q |
209 |
tagtttgagagtaaagaccagcaatcttcatttgatagaggttctaaattatgtacagcaaacacgcgtgccatctttgtaactttttgttggcgcgttg |
308 |
Q |
| |
|
| || |||||||||||||| |||||||||||||||||| ||||||| ||||||| || ||| | |||||| || | |||||||||||||||||||| |
|
|
| T |
10433716 |
tgcttcgagagtaaagaccaacaatcttcatttgatagaagttctaatttatgtataggaaatgtgtgtgccacctcagcaactttttgttggcgcgttg |
10433815 |
T |
|
| Q |
309 |
ttataatcaccatgcttccaggttttccattaatgaagg |
347 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||| |
|
|
| T |
10433816 |
ttataatcaccatgcttccgggttttccatcaatgaagg |
10433854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 10196270 - 10195932
Alignment:
| Q |
9 |
gaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttt |
108 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
|
|
| T |
10196270 |
gaagaatattatcatttgataagttccatatgtcgctgttcaaaattgaagtccactctgttatttctacctttgaacgtagaagtcctcctagtgtttt |
10196171 |
T |
|
| Q |
109 |
tgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgca |
208 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||| |||||||||||| |||||| |||| | |||||||| |
|
|
| T |
10196170 |
agcagctattggcaatcctccacacttccttgcaatcttcaggccaattgcttcaagggttgtgtttgtactatggggaaacttatcattgcccaatgca |
10196071 |
T |
|
| Q |
209 |
tagtttgagagtaaagaccagcaatcttcatttgatagaggttctaaattatgtacagcaaacacgcgtgccatctttgtaactttttgttggcgcgttg |
308 |
Q |
| |
|
| ||||||||||||| ||| |||||||||||||| ||| ||||||| ||||||| || ||| | |||||| || | ||||||| ||||||||||| |
|
|
| T |
10196070 |
tgctttgagagtaaagtccaacaatcttcatttgacagaagttctaatttatgtataggaaatgtgtgtgccacctcagctactttttcttggcgcgttg |
10195971 |
T |
|
| Q |
309 |
ttataatcaccatgcttccaggttttccattaatgaagg |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10195970 |
ttataatcaccatgcttccaggttttccatcaatgaagg |
10195932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 10032600 - 10032262
Alignment:
| Q |
9 |
gaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttt |
108 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
10032600 |
gaagaatattatcatttgataagttccatatgtcgctgttcaaaattgaagtccactctgttatgtctacctttgaacgtagaagccctccaagtgtttt |
10032501 |
T |
|
| Q |
109 |
tgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| | |||| |||| ||||||||| |||||||| |
|
|
| T |
10032500 |
ggcagctattggcaatcctccacactttcttgcaatcttcctgcctgtttcttcaagggctgtatttgcattatgctgaatctcatcactgcccaatgca |
10032401 |
T |
|
| Q |
209 |
tagtttgagagtaaagaccagcaatcttcatttgatagaggttctaaattatgtacagcaaacacgcgtgccatctttgtaactttttgttggcgcgttg |
308 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||| ||| || | ||||| || ||| || ||||| || | ||||||| ||||||| |||| |
|
|
| T |
10032400 |
tgctttgagagtaaagaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaacttttcgttggcgtgttg |
10032301 |
T |
|
| Q |
309 |
ttataatcaccatgcttccaggttttccattaatgaagg |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10032300 |
ttataatcaccatgcttccaggttttccatcaatgaagg |
10032262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 10261295 - 10260957
Alignment:
| Q |
9 |
gaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttt |
108 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |
|
|
| T |
10261295 |
gaagaatattatcatttgataagttccatatgtcgctgttcaaaattgaagtccactctgttatgtctacctttgaacgtagaagtcctccaagtgtttt |
10261196 |
T |
|
| Q |
109 |
tgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| |||| |||| ||||||||| |||||||| |
|
|
| T |
10261195 |
ggcagctattggcaatcctccacactttcttgcaatcttcctgcctgtttcttcaagggctgtatttgtattatgctgaatctcatcactgcccaatgca |
10261096 |
T |
|
| Q |
209 |
tagtttgagagtaaagaccagcaatcttcatttgatagaggttctaaattatgtacagcaaacacgcgtgccatctttgtaactttttgttggcgcgttg |
308 |
Q |
| |
|
| ||||||||||||||||| || |||||||| |||||| ||| || | ||||| || ||| || ||||| || | |||||||||||| ||||||| |
|
|
| T |
10261095 |
tgctttgagagtaaagaccaacagtcttcattcgatagaagttttagttcatgtataggaaatgtgcatgccacctcagcaactttttgttgccgcgttg |
10260996 |
T |
|
| Q |
309 |
ttataatcaccatgcttccaggttttccattaatgaagg |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||| |
|
|
| T |
10260995 |
ttataatcaccatgcttccaggttttccatcaacgaagg |
10260957 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 175; E-Value: 4e-94
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 11769831 - 11769493
Alignment:
| Q |
9 |
gaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttt |
108 |
Q |
| |
|
||||||||||||||||| |||||||||||| |||| ||||||| ||||||||||||||| |||||||||||||| ||||| ||||||| |||| | |
|
|
| T |
11769831 |
gaagaatattatcatttgataagttccatatgtcattgtttaaaattgcagtccactctgttatatctacctttgaacgtagaagccctcctattgttat |
11769732 |
T |
|
| Q |
109 |
tgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgca |
208 |
Q |
| |
|
|| || ||||||||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||| |||||||| |
|
|
| T |
11769731 |
agcggcaattggcaatcctccacactttcttgcaatcttccttcctatttcttcaagggttgtgtttgtactatggtgaaactcatcacttcccaatgca |
11769632 |
T |
|
| Q |
209 |
tagtttgagagtaaagaccagcaatcttcatttgatagaggttctaaattatgtacagcaaacacgcgtgccatctttgtaactttttgttggcgcgttg |
308 |
Q |
| |
|
| ||||||||||||||||| |||||||||||||||||| ||| ||| | ||||| || ||| | |||||| || | ||||||| ||||||| |||| |
|
|
| T |
11769631 |
tgctttgagagtaaagaccaacaatcttcatttgatagaagttttaattcatgtataggaaatgtgtgtgccacctcagcaacttttcgttggcgtgttg |
11769532 |
T |
|
| Q |
309 |
ttataatcaccatgcttccaggttttccattaatgaagg |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
11769531 |
ttataatcaccatgcttccaggttttccattactgaagg |
11769493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 29 - 347
Target Start/End: Original strand, 10375337 - 10375655
Alignment:
| Q |
29 |
aagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcagctattggcaatcctc |
128 |
Q |
| |
|
|||||||||| ||||||||||||| || ||||||||||||| |||||||||||||| ||||||||||||| |||||| ||||||||||||||||||| |
|
|
| T |
10375337 |
aagttccatacattgctgttcaaaatggatgtccactctgttacatctacctttgaacgtagaagtcctcctattgttttagcagctattggcaatcctc |
10375436 |
T |
|
| Q |
129 |
cacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgcatagtttgagagtaaagacca |
228 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||| ||||||||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
10375437 |
cacactttcttgcaatcttcctgcctatttcttcaagggttgtgtttgaactatggtgaaactcatcactacccaatgcatgctttgagagtaaagacca |
10375536 |
T |
|
| Q |
229 |
gcaatcttcatttgatagaggttctaaattatgtacagcaaacacgcgtgccatctttgtaactttttgttggcgcgttgttataatcaccatgcttcca |
328 |
Q |
| |
|
|| |||||||| |||||| ||| || | ||||| || ||| || ||| | ||| | ||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
10375537 |
acagtcttcattcgatagaagttttagttcatgtataggaaatgtgcatgctaccttagcaacttttcgttggcgcgttgttataatcaccatgcttccg |
10375636 |
T |
|
| Q |
329 |
ggttttccattaatgaagg |
347 |
Q |
| |
|
|||||||||| |||||||| |
|
|
| T |
10375637 |
ggttttccatcaatgaagg |
10375655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 10077866 - 10077528
Alignment:
| Q |
9 |
gaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttt |
108 |
Q |
| |
|
||||||| ||||||||| | |||||||||| | || |||||||||| ||||||||| |||| ||||||||||||| ||||||||||||| |||||| |
|
|
| T |
10077866 |
gaagaattttatcatttggtaagttccatacattactattcaaaattgttgtccactctattatatctacctttgaacctagaagtcctcctattgtttt |
10077767 |
T |
|
| Q |
109 |
tgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| || | ||||||| |
|
|
| T |
10077766 |
agcagctattggcaatcctccacactttcttgcaatcttcctgcctatttcttcaagggttgagtttgtactatggtgaaactcaccaactctcaatgca |
10077667 |
T |
|
| Q |
209 |
tagtttgagagtaaagaccagcaatcttcatttgatagaggttctaaattatgtacagcaaacacgcgtgccatctttgtaactttttgttggcgcgttg |
308 |
Q |
| |
|
| ||||| |||||| |||| |||||||||||||||| ||||||||| |||||| || ||| |||||||| || || ||||||||||||||| |||| |
|
|
| T |
10077666 |
tgctttgaaagtaaataccaacaatcttcatttgataaaggttctaatatatgtataggaaatgtgcgtgccacctctgcaactttttgttggcgtgttg |
10077567 |
T |
|
| Q |
309 |
ttataatcaccatgcttccaggttttccattaatgaagg |
347 |
Q |
| |
|
|||||||||||||||||||| | ||||||| |||||||| |
|
|
| T |
10077566 |
ttataatcaccatgcttccatgctttccatcaatgaagg |
10077528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 10184839 - 10184501
Alignment:
| Q |
9 |
gaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttt |
108 |
Q |
| |
|
||||||| ||||||||| | |||||||||| |||| |||||||||| ||||||||| |||| |||||||| |||| ||||||||||||| |||||| |
|
|
| T |
10184839 |
gaagaattttatcatttggtaagttccatacattgctattcaaaattgttgtccactctattatatctaccttcgaacctagaagtcctcctattgtttt |
10184740 |
T |
|
| Q |
109 |
tgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||| ||| || || ||||||||||| || | ||||||| |
|
|
| T |
10184739 |
agcagctattggcaatcctccacactttcttgcaatcttcctgcctatttcttcaaaggttgagtttctagtacggtgaaactcaccaactctcaatgca |
10184640 |
T |
|
| Q |
209 |
tagtttgagagtaaagaccagcaatcttcatttgatagaggttctaaattatgtacagcaaacacgcgtgccatctttgtaactttttgttggcgcgttg |
308 |
Q |
| |
|
| ||||||||||| ||||| |||||||||||||||||| ||| || | ||||| || ||| | |||||| || | ||||||| ||||||||||| |
|
|
| T |
10184639 |
tgctttgagagtaacgaccaacaatcttcatttgatagaagttttagttcatgtataggaaatgtgtgtgccacctcagctactttttcttggcgcgttg |
10184540 |
T |
|
| Q |
309 |
ttataatcaccatgcttccaggttttccattaatgaagg |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10184539 |
ttataatcaccatgcttccaggttttccatcaatgaagg |
10184501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 9 - 161
Target Start/End: Complemental strand, 10672279 - 10672127
Alignment:
| Q |
9 |
gaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttt |
108 |
Q |
| |
|
||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||| |
|
|
| T |
10672279 |
gaagaatattatcatttcgcaagtttcatatgttgctgttcaaaattgaagtccactcagttatgtctacctttgaacgtagaagtcctcctattgtttt |
10672180 |
T |
|
| Q |
109 |
tgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttctt |
161 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
10672179 |
agcagctattggcaatcctccacactttcttgcaatcttcctgcctatttctt |
10672127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 17 - 319
Target Start/End: Complemental strand, 10518074 - 10517772
Alignment:
| Q |
17 |
ttatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcagcta |
116 |
Q |
| |
|
||||||||||| |||||||||||| ||||||| | |||||||| |||||| || ||||||||||||| | ||||||||| |||||||| ||||||| |
|
|
| T |
10518074 |
ttatcatttcgtaagttccatatgttgctgtttagaattgaagaccactccttttcaactacctttgaacgcataagtcctccaagtgttttggcagcta |
10517975 |
T |
|
| Q |
117 |
ttggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgcatagtttga |
216 |
Q |
| |
|
|||| || || ||||| ||| | ||||||||||||||||| |||||||| ||| | | |||| || | | || | ||| | ||||||| ||||| |
|
|
| T |
10517974 |
ttggtaacccaccacattttttagcaatcttcctgccaatctcttcaagatttgggtatttactgtgatcactgtccttactaccaaatgcatgttttga |
10517875 |
T |
|
| Q |
217 |
gagtaaagaccagcaatcttcatttgatagaggttctaaattatgtacagcaaacacgcgtgccatctttgtaactttttgttggcgcgttgttataatc |
316 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||| | || | || ||| | |||||| || || |||||||||||||||||||||||||||| |
|
|
| T |
10517874 |
gagtaaagaccaacaatcttcatgagatagaggttctaattcctgaataggaaatgtgtgtgccacctctgcaactttttgttggcgcgttgttataatc |
10517775 |
T |
|
| Q |
317 |
acc |
319 |
Q |
| |
|
||| |
|
|
| T |
10517774 |
acc |
10517772 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 17 - 338
Target Start/End: Original strand, 11781462 - 11781783
Alignment:
| Q |
17 |
ttatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcagcta |
116 |
Q |
| |
|
||||||||||| ||||||||||| ||||||| | ||||||||||||||| || ||||||||||||| | ||||||||| ||||| || ||||||| |
|
|
| T |
11781462 |
ttatcatttcgtaagttccatatattgctgttgagaattgaagtccactccttttcaactacctttgaacgcataagtcctccaagtgtcttggcagcta |
11781561 |
T |
|
| Q |
117 |
ttggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgcatagtttga |
216 |
Q |
| |
|
|||||||||| ||||| ||| | ||||||||||||||||| ||||| ||| ||| | | ||| | | | | || | ||| | ||||||| || || |
|
|
| T |
11781562 |
ttggcaatccaccacattttttagcaatcttcctgccaatctcttctaggtttgggtatttacggcgatcacagtccttactaccaaatgcatgtttcga |
11781661 |
T |
|
| Q |
217 |
gagtaaagaccagcaatcttcatttgatagaggttctaaattatgtacagcaaacacgcgtgccatctttgtaactttttgttggcgcgttgttataatc |
316 |
Q |
| |
|
|||||||||||| |||||||||| |||||||||||||| ||| | || ||| | |||||| || || ||||||||||||||| |||||||||||| |
|
|
| T |
11781662 |
gagtaaagaccaacaatcttcatgagatagaggttctaatgcatgaataggaaatgtgtgtgccacctctgcaactttttgttggcgagttgttataatc |
11781761 |
T |
|
| Q |
317 |
accatgcttccaggttttccat |
338 |
Q |
| |
|
||| |||||||||||||||| |
|
|
| T |
11781762 |
accgaacttccaggttttccat |
11781783 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 13344682 - 13344533
Alignment:
| Q |
13 |
aatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgca |
112 |
Q |
| |
|
||||||||||||| | |||||||||||| || || | ||||| |||||||||| || |||||||||||||| | || |||||| |||||||| ||| |
|
|
| T |
13344682 |
aatattatcatttggtaagttccatatgtcactatttagaattgcagtccactcttttgcatctacctttgaacgcaaaattcctccgagtgttttagca |
13344583 |
T |
|
| Q |
113 |
gctattggcaatcctccacactttcttgcaatcttcctgccaatttcttc |
162 |
Q |
| |
|
||||| |||||||| ||||||||| | |||||||| || ||||||||||| |
|
|
| T |
13344582 |
gctatgggcaatccaccacactttttggcaatctttctaccaatttcttc |
13344533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 10501162 - 10501018
Alignment:
| Q |
18 |
tatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcagctat |
117 |
Q |
| |
|
||||||||| |||||||||||| ||| |||| ||||| |||||||||| || | |||||||||| | |||||||| |||| |||||||||||| |
|
|
| T |
10501162 |
tatcatttcttaagttccatatgtcgctattcagaattgcagtccactctttttcaaccgcctttgaacgcaatagtcctccaagtgcttttgcagctat |
10501063 |
T |
|
| Q |
118 |
tggcaatcctccacactttcttgcaatcttcctgccaatttcttc |
162 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||| ||||| |
|
|
| T |
10501062 |
cggcaatccaccacactttctagcaatcttcctgccaatctcttc |
10501018 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 13171624 - 13171475
Alignment:
| Q |
13 |
aatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgca |
112 |
Q |
| |
|
||||||||||||| | |||||||||||| || || | ||||| |||||||||| || |||||||||||||| | || |||||| |||||||| | | |
|
|
| T |
13171624 |
aatattatcatttggtaagttccatatgtcactatttagaattgcagtccactcttttgcatctacctttgaacgcaaaattcctccgagtgttttagga |
13171525 |
T |
|
| Q |
113 |
gctattggcaatcctccacactttcttgcaatcttcctgccaatttcttc |
162 |
Q |
| |
|
||||| |||||||| ||||||||| | |||||||| || ||||||||||| |
|
|
| T |
13171524 |
gctatgggcaatccaccacactttttggcaatctttctaccaatttcttc |
13171475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 162
Target Start/End: Complemental strand, 13333492 - 13333348
Alignment:
| Q |
18 |
tatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcagctat |
117 |
Q |
| |
|
|||||||| | |||||||||||| || || | ||||| |||||||||| || |||||||||||||| | || |||||| |||||||| |||||||| |
|
|
| T |
13333492 |
tatcatttggtaagttccatatgtcactatttagaattgcagtccactcttttgcatctacctttgaacgcaaaattcctccgagtgttttagcagctat |
13333393 |
T |
|
| Q |
118 |
tggcaatcctccacactttcttgcaatcttcctgccaatttcttc |
162 |
Q |
| |
|
|||||||| ||||||||| | |||||||| || ||||||||||| |
|
|
| T |
13333392 |
gggcaatccaccacactttttggcaatctttctaccaatttcttc |
13333348 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 8861798 - 8861730
Alignment:
| Q |
94 |
tcctcctagtgtttttgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttc |
162 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| || ||||||||||||||||||| || |||||| |||| |
|
|
| T |
8861798 |
tcctccaagtgtttttgcagctatgggcaacccagcacactttcttgcaatctttctaccaattgcttc |
8861730 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #25
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 11130583 - 11130651
Alignment:
| Q |
94 |
tcctcctagtgtttttgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttc |
162 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| || ||||||||||||||||||| || |||||| |||| |
|
|
| T |
11130583 |
tcctccaagtgtttttgcagctatgggcaacccagcacactttcttgcaatctttctaccaattgcttc |
11130651 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #26
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 94 - 162
Target Start/End: Original strand, 11148411 - 11148479
Alignment:
| Q |
94 |
tcctcctagtgtttttgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttc |
162 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| || ||||||||||||||||||| || |||||| |||| |
|
|
| T |
11148411 |
tcctccaagtgtttttgcagctatgggcaacccaacacactttcttgcaatctttctaccaattgcttc |
11148479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 10889818 - 10889766
Alignment:
| Q |
94 |
tcctcctagtgtttttgcagctattggcaatcctccacactttcttgcaatct |
146 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
10889818 |
tcctccaagtgtttttgcagctatgggcaacccagcacactttcttgcaatct |
10889766 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #28
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 94 - 146
Target Start/End: Original strand, 11159574 - 11159626
Alignment:
| Q |
94 |
tcctcctagtgtttttgcagctattggcaatcctccacactttcttgcaatct |
146 |
Q |
| |
|
|||||| ||||||||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
11159574 |
tcctccaagtgtttttgcagctatgggcaacccagcacactttcttgcaatct |
11159626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 211; Significance: 1e-115; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 9 - 347
Target Start/End: Complemental strand, 26907494 - 26907156
Alignment:
| Q |
9 |
gaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttt |
108 |
Q |
| |
|
||||||||||||||||||| |||||||||| | | ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||| |
|
|
| T |
26907494 |
gaagaatattatcatttcgtaagttccatacgtcgttgttcaaaattgaagtccactctgttatgtctacctttgaacgtagaattcctcctagtgtttt |
26907395 |
T |
|
| Q |
109 |
tgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactttccaatgca |
208 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| | |||| |||||||| |
|
|
| T |
26907394 |
agcagcaattggcaatcctccacactttcttgcaatcttcctgccaatttcttcgagggttgtgttaatactatggtgaaactctttacttcccaatgca |
26907295 |
T |
|
| Q |
209 |
tagtttgagagtaaagaccagcaatcttcatttgatagaggttctaaattatgtacagcaaacacgcgtgccatctttgtaactttttgttggcgcgttg |
308 |
Q |
| |
|
| ||||||||||||||||| ||||||||| |||||||||||||||| ||||||| || ||| |||||| || || |||||||||||||||||||| |
|
|
| T |
26907294 |
tgctttgagagtaaagaccaacaatcttcagttgatagaggttctaatttatgtataggaaatgtatgtgccacctctgcaactttttgttggcgcgttg |
26907195 |
T |
|
| Q |
309 |
ttataatcaccatgcttccaggttttccattaatgaagg |
347 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
26907194 |
ttataatcaccatgcttccaggttttccatgaatgaagg |
26907156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 180; Significance: 4e-97; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 9 - 243
Target Start/End: Original strand, 57883 - 58126
Alignment:
| Q |
9 |
gaagaatattatcatttcgcaagttccatatgctgctgttcaaaa---------ttgaagtccactctgttatgtctacctttgaacggagaagtcctcc |
99 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
57883 |
gaagaatattatcatttcgcaagttccatatgctgctgttcaaaattgaaaaaattgaagtccactatgttatgtctacctttgaaaggagaagtcctcc |
57982 |
T |
|
| Q |
100 |
tagtgtttttgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtactatggtgaaactcatcactt |
199 |
Q |
| |
|
||||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
57983 |
tagtgttttagcagctattggcaatcccccacaccttcttgcaatcttcctgccaatttcttcaagggctgtatttgtactatggtgaaactcatcactt |
58082 |
T |
|
| Q |
200 |
tccaatgcatagtttgagagtaaagaccagcaatcttcatttga |
243 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
58083 |
cccaatgcatagtttgagagtaaagaccaacaatcttcatttga |
58126 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 75 - 347
Target Start/End: Complemental strand, 11485569 - 11485297
Alignment:
| Q |
75 |
ctacctttgaacggagaagtcctcctagtgtttttgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatt |
174 |
Q |
| |
|
||||||||||| | | |||||||| |||| ||||||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||| ||| ||| | |
|
|
| T |
11485569 |
ctacctttgaatgcattagtcctccaagtgcttttgcagcaattggcaatccaccacactttctagcaatcttcctgccaatctcttctaggtttgggta |
11485470 |
T |
|
| Q |
175 |
tgtactatggtgaaactcatcactttccaatgcatagtttgagagtaaagaccagcaatcttcatttgatagaggttctaaattatgtacagcaaacacg |
274 |
Q |
| |
|
| ||| | |||| || |||| | ||||||| || |||||||||||||| |||||||||| |||||||||||||| ||||| | || ||| || |
|
|
| T |
11485469 |
tttaccccgaagaaattcttcaccgccaaatgcatgcttcgagagtaaagaccaacaatcttcatcagatagaggttctaatttatgaataggaaatgcg |
11485370 |
T |
|
| Q |
275 |
cgtgccatctttgtaactttttgttggcgcgttgttataatcaccatgcttccaggttttccattaatgaagg |
347 |
Q |
| |
|
| ||| | || || |||||| | || ||| |||||||| |||||| ||||| ||| || ||||||||| |||| |
|
|
| T |
11485369 |
catgcgacctctgcaactttctcttcgcgtgttgttatgatcaccttgcttacagtttctccattaatcaagg |
11485297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 44957170 - 44957314
Alignment:
| Q |
18 |
tatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcagctat |
117 |
Q |
| |
|
|||||||||| ||||||||||| ||| |||| ||||||||||||||| || ||| ||||||||| | ||||||||| |||||||| |||||||| |
|
|
| T |
44957170 |
tatcatttcgttagttccatatgtcgctattcagaattgaagtccactccttttcaactatctttgaacgcataagtcctcccagtgttttggcagctat |
44957269 |
T |
|
| Q |
118 |
tggcaatcctccacactttcttgcaatcttcctgccaatttcttc |
162 |
Q |
| |
|
||||||||| ||||| ||| | ||||||||||||||||| ||||| |
|
|
| T |
44957270 |
tggcaatccaccacattttttagcaatcttcctgccaatctcttc |
44957314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 203 - 261
Target Start/End: Original strand, 44957354 - 44957412
Alignment:
| Q |
203 |
aatgcatagtttgagagtaaagaccagcaatcttcatttgatagaggttctaaattatg |
261 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||| |||||||||||||| ||||| |
|
|
| T |
44957354 |
aatgcatgctttgagagtaaagaccaacaatcttcatcagatagaggttctaatttatg |
44957412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 80 - 260
Target Start/End: Original strand, 31679276 - 31679456
Alignment:
| Q |
80 |
tttgaacggagaagtcctcctagtgtttttgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttcaagggttgtatttgtac |
179 |
Q |
| |
|
||||| || ||||||||||| |||||||| ||||||||||||||||| | ||||||| ||||||||||||| |||||| |||| ||| ||| | | ||| |
|
|
| T |
31679276 |
tttgagcgtagaagtcctccaagtgttttggcagctattggcaatccgcaacacttttttgcaatcttcctaccaattgcttctaggcttgggtatttac |
31679375 |
T |
|
| Q |
180 |
tatggtgaaactcatcactttccaatgcatagtttgagagtaaagaccagcaatcttcatttgatagaggttctaaattat |
260 |
Q |
| |
|
|| || |||||| | ||||||| ||||||||||||||||||||||| |||| ||||||||||||||| |||| |
|
|
| T |
31679376 |
ggccacaaagttcttcacttccaaatgcatgctttgagagtaaagaccagcaatcatcatctgatagaggttctaatttat |
31679456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 13 - 162
Target Start/End: Original strand, 135364 - 135513
Alignment:
| Q |
13 |
aatattatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgca |
112 |
Q |
| |
|
||||||||||||| | |||||||||||| || || | ||||| |||||||||| || |||||||||||||| | || |||||| |||||||| | | |
|
|
| T |
135364 |
aatattatcatttggtaagttccatatgtcactatttagaattgcagtccactcttttgcatctacctttgaacgcaaaattcctccgagtgttttagga |
135463 |
T |
|
| Q |
113 |
gctattggcaatcctccacactttcttgcaatcttcctgccaatttcttc |
162 |
Q |
| |
|
||||| |||||||| ||||||||| | |||||||| || ||||||||||| |
|
|
| T |
135464 |
gctatgggcaatccaccacactttttggcaatctttctaccaatttcttc |
135513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 145420 - 145564
Alignment:
| Q |
18 |
tatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcagctat |
117 |
Q |
| |
|
|||||||| | |||||||||||| || || | ||||| |||||||||| || |||||||||||||| | || |||||| |||||||| |||||||| |
|
|
| T |
145420 |
tatcatttggtaagttccatatgtcactatttagaattgcagtccactcttttgcatctacctttgaacgcaaaattcctccgagtgttttagcagctat |
145519 |
T |
|
| Q |
118 |
tggcaatcctccacactttcttgcaatcttcctgccaatttcttc |
162 |
Q |
| |
|
|||||||| ||||||||| | |||||||| || ||||||||||| |
|
|
| T |
145520 |
gggcaatccaccacactttttggcaatctttctaccaatttcttc |
145564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 18 - 162
Target Start/End: Original strand, 153725 - 153869
Alignment:
| Q |
18 |
tatcatttcgcaagttccatatgctgctgttcaaaattgaagtccactctgttatgtctacctttgaacggagaagtcctcctagtgtttttgcagctat |
117 |
Q |
| |
|
|||||||| | |||||||||||| || || | ||||| |||||||||| || |||||||||||||| | || |||||| |||||||| |||||||| |
|
|
| T |
153725 |
tatcatttggtaagttccatatgtcactatttagaattgcagtccactcttttgcatctacctttgaacgcaaaattcctccgagtgttttagcagctat |
153824 |
T |
|
| Q |
118 |
tggcaatcctccacactttcttgcaatcttcctgccaatttcttc |
162 |
Q |
| |
|
|||||||| ||||||||| | |||||||| || ||||||||||| |
|
|
| T |
153825 |
gggcaatccaccacactttttggcaatctttctaccaatttcttc |
153869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 95 - 162
Target Start/End: Complemental strand, 826413 - 826346
Alignment:
| Q |
95 |
cctcctagtgtttttgcagctattggcaatcctccacactttcttgcaatcttcctgccaatttcttc |
162 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||| ||||||||| ||||||||||| | |||||| |||| |
|
|
| T |
826413 |
cctcctagcgttttggcagctattggcaatccaccacacttttttgcaatcttcttcccaattgcttc |
826346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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