View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_low_31 (Length: 358)
Name: NF8085_low_31
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_low_31 |
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| [»] chr2 (2 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 77 - 358
Target Start/End: Complemental strand, 7705827 - 7705542
Alignment:
| Q |
77 |
ggttatatattgtgcacatgtaaaatcgattatattactatctgaatagttgaattattatgtactta-agttttgaaatcatgttgtcaataataagga |
175 |
Q |
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| T |
7705827 |
ggttatatattgttcacatgtaaaattgattat--tactatctgaatagttgaattattatgtattttgaattttaaaatcatgttgtcaataataagga |
7705730 |
T |
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| Q |
176 |
aattcatgtttcaattacttccattttcctctatttatttcttaatttccttttcatatttcatccct-------ttccttacgtaatccaatatgatgc |
268 |
Q |
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| T |
7705729 |
aattcatgtttcaattacttccattttcctctatttatttcttaatttccttttcatatatcattcctcatttcatcccttcctta--cgtatattatgc |
7705632 |
T |
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| Q |
269 |
actggttagaattagcgataagcattaacaattaataattttattgcttaaaggatctacatggtttatattgctattgaagaatgacat |
358 |
Q |
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| T |
7705631 |
actgattggcattagcgataagcattaacaattaataattttattgcttaaaggatctacatggcttatattgctattgaagaatgacat |
7705542 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 7705930 - 7705887
Alignment:
| Q |
1 |
gataaaagtttgaagatatatgaagaattgtagcgtagtcttta |
44 |
Q |
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| T |
7705930 |
gataaaagtttgaagatatatgaagaattgtagcgtagtcttta |
7705887 |
T |
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