View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_low_33 (Length: 348)
Name: NF8085_low_33
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_low_33 |
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Alignment Details
Target: chr6 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 20 - 339
Target Start/End: Complemental strand, 34879414 - 34879095
Alignment:
| Q |
20 |
atagataagctattaacaatagttcaaatacctgtgttgacaaagattgcattgttttttgaaggtggtatctcaatccattttccatctttgaagaatt |
119 |
Q |
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| T |
34879414 |
atagataagctattaacaatagttcaaatacctgtgttgacaaagatagcattgttttttgaaggtggtatctcaatccattttccatctttgaagaatt |
34879315 |
T |
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| Q |
120 |
caagaccaggtactttgtcatcttgaagcaataggatgattccaccagcatctgtatgctctcttaaacctctaaccaattctggatatgtacattcagg |
219 |
Q |
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| T |
34879314 |
caagaccaggtactttgtcatcttgaagcaataggatgattccaccagcatctgtatgctctcttaaacctcttaccaattctggatatggacattcagg |
34879215 |
T |
|
| Q |
220 |
gtactttgccacttttgtgcccatagctggtccattattattacttcctgaaaatgctttctttatgtaatctttctctaaaccaagattttcactcatc |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
34879214 |
gtactttgccacttttgtgcccatagctggtccattattattatttcctgaaaatgctttctttatgtaatctttctccaaaccaagattttcactcatc |
34879115 |
T |
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| Q |
320 |
atctgagataatgtctctgc |
339 |
Q |
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|||||||||||||||||||| |
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| T |
34879114 |
atctgagataatgtctctgc |
34879095 |
T |
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