View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_low_35 (Length: 342)
Name: NF8085_low_35
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_low_35 |
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| [»] scaffold0531 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 20 - 332
Target Start/End: Complemental strand, 361924 - 361612
Alignment:
| Q |
20 |
tcaaggtggtgagggtgcagcgaatcaaggtgcaaatcaagaaaatctggaaaaatggttgccaattagtgcatctaggaaagcaaaatggtggtattca |
119 |
Q |
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| T |
361924 |
tcaaggtggtgagggtgcagcgaatcaaggtgcaaatcaagaaaatctgcaaaaatggttgccaattagtgcatctagaaaagcaaaatggtggtattca |
361825 |
T |
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| Q |
120 |
accttccataatgtgactgctatggttggtgctggtgtcctagggttaccatttgctttatcccagcttggatggtatttatatcttaattcattcaatt |
219 |
Q |
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| T |
361824 |
acttttcataatgtgactgctatggttggtgctggtgtcctagggttaccatttgctttatcccagcttggatggtatttatatcttaattcattcaatt |
361725 |
T |
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| Q |
220 |
tcatcacttcaaactcttcattaccactatctaggtcacttactcgacaccaatgaaaacacatcaccactggtaacaaatcgagaacatgagttaagga |
319 |
Q |
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| T |
361724 |
tcatcacttcaaactcttcattaccactatctaggtcacttactcgacaccaatgaaaacacatcaccactggtaacaaatcgagaacatgagttaagga |
361625 |
T |
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| Q |
320 |
tgtaatcacgtgt |
332 |
Q |
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| T |
361624 |
tgtaatcacgtgt |
361612 |
T |
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Target: scaffold0531 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0531
Description:
Target: scaffold0531; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 4045 - 3984
Alignment:
| Q |
96 |
aggaaagcaaaatggtggtattcaaccttccataatgtgactgctatggttggtgctggtgt |
157 |
Q |
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| T |
4045 |
aggaatgcaaaatggtggtattcttctttccacaatgtcactgcaatggttggagctggtgt |
3984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 157
Target Start/End: Complemental strand, 7973052 - 7972991
Alignment:
| Q |
96 |
aggaaagcaaaatggtggtattcaaccttccataatgtgactgctatggttggtgctggtgt |
157 |
Q |
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| T |
7973052 |
aggaatgcaaaatggtggtactcgactttccacaatgtcactgccatggttggagctggtgt |
7972991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 8031621 - 8031682
Alignment:
| Q |
96 |
aggaaagcaaaatggtggtattcaaccttccataatgtgactgctatggttggtgctggtgt |
157 |
Q |
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| T |
8031621 |
aggaatgcaaaatggtggtattcttctttccacaatgtcactgcaatggttggagctggtgt |
8031682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 96 - 157
Target Start/End: Original strand, 8040989 - 8041050
Alignment:
| Q |
96 |
aggaaagcaaaatggtggtattcaaccttccataatgtgactgctatggttggtgctggtgt |
157 |
Q |
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| T |
8040989 |
aggaatgcaaaatggtggtactcgactttccacaatgtcactgccatggttggagctggtgt |
8041050 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 81 - 157
Target Start/End: Complemental strand, 14199233 - 14199157
Alignment:
| Q |
81 |
ccaattagtgcatctaggaaagcaaaatggtggtattcaaccttccataatgtgactgctatggttggtgctggtgt |
157 |
Q |
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| T |
14199233 |
ccaattagttcgtcaagaaatgcaaaatggtggtattctgcattccacaatgttactgccatggttggagctggtgt |
14199157 |
T |
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