View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_low_37 (Length: 324)
Name: NF8085_low_37
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_low_37 |
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Alignment Details
Target: chr2 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 309
Target Start/End: Original strand, 34170155 - 34170442
Alignment:
| Q |
18 |
taaatatcatatagtacgattgtcatcaaagacagagatttatctcagaattcctagtacacatgcgacacaaatcatctctcannnnnnngggtaagta |
117 |
Q |
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| T |
34170155 |
taaatatcatatagtacgattgtcatcaaagacaga--tttatctcagaattcctagtacacatgcgacacaaatcatctctcatttttttgggtaagta |
34170252 |
T |
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| Q |
118 |
aatattcattgataatgtctagctacaacattaatgtgtacaaaactctgcttaacgtttaggaagggttgcagaaaaggacactaatgaatcatttgct |
217 |
Q |
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| T |
34170253 |
aatattcattgataatgtctagctacaacattaatgtgtacaaaactctgcttaccgtttaggaagggttgcagaaaaggacactgatgaatcatttgct |
34170352 |
T |
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| Q |
218 |
aggaagctagactgagaaaatatcgtgcacaatgctttacacgagcaaaattacaccaaataaacttctctatattgttgaaaaattctctg |
309 |
Q |
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| T |
34170353 |
aggaagctagactgagaaaatatcgtgcacaatgctttacacgagcaaaattacaccaaataaatttctc--tattgttgaaaaattctctg |
34170442 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 48 - 95
Target Start/End: Original strand, 34172178 - 34172224
Alignment:
| Q |
48 |
gacagagatttatctcagaattcctagtacacatgcgacacaaatcat |
95 |
Q |
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| T |
34172178 |
gacagagatt-atctcagaattcctattacacatgcgacccaaatcat |
34172224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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