View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8085_low_40 (Length: 310)

Name: NF8085_low_40
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8085_low_40
NF8085_low_40
[»] chr1 (2 HSPs)
chr1 (20-296)||(34593621-34593919)
chr1 (143-234)||(34577932-34578023)
[»] chr6 (3 HSPs)
chr6 (144-234)||(32590173-32590263)
chr6 (144-234)||(32600621-32600711)
chr6 (144-230)||(24883687-24883773)
[»] chr7 (2 HSPs)
chr7 (192-230)||(27526724-27526762)
chr7 (192-230)||(27532378-27532416)


Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 20 - 296
Target Start/End: Original strand, 34593621 - 34593919
Alignment:
Q  20 aggagcctatcagtatatacaaaagaaaccaatttagtgaaaaatcaaaaacgatttgcttaaaggatgtcatgacaatggcaatgccatcacaatacta 119  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34593621 aggagcctatcattatatacaaaagaaaccaatttagtgaaaaatcaaaaacaatttgcttaaaggatgtcatgacaatggcaatgccatcacaatacta 34593720  T
Q  120 -----------------agtatctaaattttgtttcatc-----ataccttagctaaagcccatatgctgaaatgtgaacgatattcttctgtagtcatg 197  Q
                     ||||||||||||||||||||||     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34593721 gaagtcaagggctggtaagtatctaaattttgtttcatcacatcataccttagctaaagcccatatgctgaaatgtgaacgatattcttctgtagtcatg 34593820  T
Q  198 cctccatttccaacctcaagcatgtcaggatctaataattcaagaagcaattaatttctgagtgcaatattctctaaattgcaattgttaattaattac 296  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34593821 cctccattcccaacctcaagcatgtcaggatctaataattcaagaagcaattaatttctgagtgcaatattctctaaattgcaattgttaattaattac 34593919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 34577932 - 34578023
Alignment:
Q  143 taccttagctaaagcccatatgctgaaatgtgaacgatattcttctgtagtcatgcctccatttccaacctcaagcatgtcaggatctaata 234  Q
    |||||||||||| ||||| ||||||||||| | ||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||    
T  34577932 taccttagctaatgcccaaatgctgaaatgggcacgatattcctctgtggtcatgcctccatttccaacttcaagcatatcaggatctaata 34578023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 63; Significance: 2e-27; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 32590173 - 32590263
Alignment:
Q  144 accttagctaaagcccatatgctgaaatgtgaacgatattcttctgtagtcatgcctccatttccaacctcaagcatgtcaggatctaata 234  Q
    ||||||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||    
T  32590173 accttagctaatgcccagatgctgaaatgggaacgatattcctctgttgtcatgcctccatttccaacttcaagcatatcaggatctaata 32590263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 144 - 234
Target Start/End: Original strand, 32600621 - 32600711
Alignment:
Q  144 accttagctaaagcccatatgctgaaatgtgaacgatattcttctgtagtcatgcctccatttccaacctcaagcatgtcaggatctaata 234  Q
    ||||||||||| ||||| ||||||||||| ||||||||||| ||||| |||||||||||||||||||| |||||||| |||||||||||||    
T  32600621 accttagctaatgcccagatgctgaaatgggaacgatattcctctgttgtcatgcctccatttccaacttcaagcatatcaggatctaata 32600711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 144 - 230
Target Start/End: Complemental strand, 24883773 - 24883687
Alignment:
Q  144 accttagctaaagcccatatgctgaaatgtgaacgatattcttctgtagtcatgcctccatttccaacctcaagcatgtcaggatct 230  Q
    |||||| |||| ||||||||||||||||| | ||||||||||||||| ||||| |||||||||||||| ||||||||||||||||||    
T  24883773 accttaactaatgcccatatgctgaaatgggcacgatattcttctgttgtcatacctccatttccaacttcaagcatgtcaggatct 24883687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 27526762 - 27526724
Alignment:
Q  192 gtcatgcctccatttccaacctcaagcatgtcaggatct 230  Q
    ||||| |||||||||||||||||||||||||||||||||    
T  27526762 gtcatccctccatttccaacctcaagcatgtcaggatct 27526724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 192 - 230
Target Start/End: Complemental strand, 27532416 - 27532378
Alignment:
Q  192 gtcatgcctccatttccaacctcaagcatgtcaggatct 230  Q
    ||||| ||||||||||||||||||||||| |||||||||    
T  27532416 gtcatccctccatttccaacctcaagcatatcaggatct 27532378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University