View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_low_41 (Length: 308)
Name: NF8085_low_41
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_low_41 |
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| [»] chr6 (3 HSPs) |
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| [»] chr4 (1 HSPs) |
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| [»] scaffold0532 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 266; Significance: 1e-148; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 6740399 - 6740110
Alignment:
| Q |
19 |
ggaacacccctagtagcagtcttactcaatggcgaaaactaccgaacatggtcgcgttcaatgaaaactgcactacgtgcaaaaatgaaactaggtttca |
118 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
6740399 |
ggaacacccctggtagcagtcttactcaatggcgaaaactaccgaatgtggtcgcgttcaatgaaaactgcactccgtgcaaaaatgaaactaggtttca |
6740300 |
T |
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| Q |
119 |
ttgacggagcagtcacaaagccggtaaagcagaatgcagactaccaaaactgggagagagcggactccatggtgatggcatggatcataaacgcgacgga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6740299 |
ttgacggagcagtcacaaagccggtaaagcagaatgcagactaccaaaacagggagagagcggactccatggtgatggcatggatcataaacgcgacgga |
6740200 |
T |
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| Q |
219 |
tcagaaacttcacggcagtatctcgcatgcaaccaccgcgagagacgtctggctggatctcgaagagcgttttgctcaagcaaatgcacc |
308 |
Q |
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| T |
6740199 |
tcagaaacttcacgacagtatctcgcatgcaaccaccgcgagagacgtctggctggatctcgaagagcgttttgctcaagcaaatgcacc |
6740110 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 169 - 308
Target Start/End: Original strand, 9584561 - 9584700
Alignment:
| Q |
169 |
tgggagagagcggactccatggtgatggcatggatcataaacgcgacggatcagaaacttcacggcagtatctcgcatgcaaccaccgcgagagacgtct |
268 |
Q |
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| T |
9584561 |
tgggagagagcggattcaatggtaacggcatggatcatcaactccactgatcagaaactgcatagcaatatttcacatgcatcaaccgcaagggacatct |
9584660 |
T |
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| Q |
269 |
ggctggatctcgaagagcgttttgctcaagcaaatgcacc |
308 |
Q |
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| T |
9584661 |
ggctcgatctcgaagaacgcttcgctcaaaccaatgcacc |
9584700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 48 - 126
Target Start/End: Original strand, 9584440 - 9584518
Alignment:
| Q |
48 |
tggcgaaaactaccgaacatggtcgcgttcaatgaaaactgcactacgtgcaaaaatgaaactaggtttcattgacgga |
126 |
Q |
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||||||||||||| |||| ||||| || || |||||||| ||||| || |||||| |||| || |||||||| |||||| |
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| T |
9584440 |
tggcgaaaactacagaacgtggtcacgatcgatgaaaacagcacttcgagcaaaattgaagctcggtttcatcgacgga |
9584518 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 266; Significance: 1e-148; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 266; E-Value: 1e-148
Query Start/End: Original strand, 19 - 308
Target Start/End: Complemental strand, 52081994 - 52081705
Alignment:
| Q |
19 |
ggaacacccctagtagcagtcttactcaatggcgaaaactaccgaacatggtcgcgttcaatgaaaactgcactacgtgcaaaaatgaaactaggtttca |
118 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
52081994 |
ggaacacccctggtagcagtcttactcaatggcgaaaactaccgaatgtggtcgcgttcaatgaaaactgcactccgtgcaaaaatgaaactaggtttca |
52081895 |
T |
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| Q |
119 |
ttgacggagcagtcacaaagccggtaaagcagaatgcagactaccaaaactgggagagagcggactccatggtgatggcatggatcataaacgcgacgga |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52081894 |
ttgacggagcagtcacaaagccggtaaagcagaatgcagactaccaaaactgggagagagcggactccatggtgatggcatggatcataaacgcgacgga |
52081795 |
T |
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| Q |
219 |
tcagaaacttcacggcagtatctcgcatgcaaccaccgcgagagacgtctggctggatctcgaagagcgttttgctcaagcaaatgcacc |
308 |
Q |
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| T |
52081794 |
tcagaaacttcacgtcagtatctcgcatgcaaccaccgcgagagacttctggctggatctcgaagagcgttttgctcaagcaaatgcacc |
52081705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0532 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0532
Description:
Target: scaffold0532; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 293
Target Start/End: Complemental strand, 2752 - 2502
Alignment:
| Q |
43 |
ctcaatggcgaaaactaccgaacatggtcgcgttcaatgaaaactgcactacgtgcaaaaatgaaactaggtttcattgacggagcagtcacaaagccgg |
142 |
Q |
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||||| |||||||||||| |||||||||| || |||||||| || || || || |||||||||||||| |||||| |||| ||| || | || || | || |
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| T |
2752 |
ctcaacggcgaaaactacagaacatggtcacgatcaatgaagaccgcgcttcgagcaaaaatgaaacttggtttcgttgatggaacaataacgaaactgg |
2653 |
T |
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| Q |
143 |
taaagcagaatgcagactaccaaaactgggagagagcggactccatggtgatggcatggatcataaacgcgacggatcagaaacttcacggcagtatctc |
242 |
Q |
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| T |
2652 |
gaaagaagataacaaattacaccaactgggagagagcagactcaatggtgatggcatggatcataaattccactgatgagaaactgcatatcagtatttc |
2553 |
T |
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| Q |
243 |
gcatgcaaccaccgcgagagacgtctggctggatctcgaagagcgttttgc |
293 |
Q |
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|||||| | || ||||| || ||||||| |||||||||||||| ||||| |
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| T |
2552 |
tcatgcatcaacggcgagggaaatctggcttgatctcgaagagcgctttgc |
2502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0532; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 43 - 293
Target Start/End: Complemental strand, 8957 - 8707
Alignment:
| Q |
43 |
ctcaatggcgaaaactaccgaacatggtcgcgttcaatgaaaactgcactacgtgcaaaaatgaaactaggtttcattgacggagcagtcacaaagccgg |
142 |
Q |
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||||| |||||||||||| |||||||||| || |||||||| || || || || |||||||||||||| |||||| |||| ||| || | || || | || |
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| T |
8957 |
ctcaacggcgaaaactacagaacatggtcacgatcaatgaagaccgcgcttcgagcaaaaatgaaacttggtttcgttgatggaacaataacgaaactgg |
8858 |
T |
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| Q |
143 |
taaagcagaatgcagactaccaaaactgggagagagcggactccatggtgatggcatggatcataaacgcgacggatcagaaacttcacggcagtatctc |
242 |
Q |
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|||| ||| || | ||| |||||||||||||| ||||| ||||||||||||||||||||||| | || ||| ||||||| || |||||| || |
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| T |
8857 |
gaaagaagataacaaattacaccaactgggagagagcagactcaatggtgatggcatggatcataaattccactgatgagaaactgcataacagtatttc |
8758 |
T |
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| Q |
243 |
gcatgcaaccaccgcgagagacgtctggctggatctcgaagagcgttttgc |
293 |
Q |
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| T |
8757 |
tcatgcatcaacggcgagggaaatctggcttgatctcgaagagcgctttgc |
8707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 297
Target Start/End: Complemental strand, 33724142 - 33724101
Alignment:
| Q |
256 |
gcgagagacgtctggctggatctcgaagagcgttttgctcaa |
297 |
Q |
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||||| ||| ||||||| |||||||||||||||||||||||| |
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| T |
33724142 |
gcgagggacatctggctcgatctcgaagagcgttttgctcaa |
33724101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 257 - 297
Target Start/End: Complemental strand, 33797605 - 33797565
Alignment:
| Q |
257 |
cgagagacgtctggctggatctcgaagagcgttttgctcaa |
297 |
Q |
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| T |
33797605 |
cgagggacatctggctcgatctcgaagagcgttttgctcaa |
33797565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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