View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8085_low_44 (Length: 296)

Name: NF8085_low_44
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8085_low_44
NF8085_low_44
[»] chr8 (2 HSPs)
chr8 (26-200)||(31592154-31592324)
chr8 (225-280)||(31592101-31592156)


Alignment Details
Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 31592324 - 31592154
Alignment:
Q  26 aaatagaagtactcctaaacatcttaaagatagagtgcttcattgatga---aaatcataagaaaatcctttagtttaatttggatcaacaaacaactat 122  Q
    |||||||||||||||||| |||||| ||||||||||| ||||||||| |   |||||| ||||||||||||||||||    ||||||||||||||||| |    
T  31592324 aaatagaagtactcctaagcatcttgaagatagagtgtttcattgataataaaaatcagaagaaaatcctttagttt----tggatcaacaaacaactct 31592229  T
Q  123 tgacttttcaaaccaagattataaaaccttgtaaacactcgttagtgtgttttcaaacgttgacaaccctctaaagat 200  Q
    ||||||||||||||| ||||||||||||||||| ||||   || ||||||||||||| |||||| ||| |||||||||    
T  31592228 tgacttttcaaaccaggattataaaaccttgtagacac---ttggtgtgttttcaaatgttgacgaccttctaaagat 31592154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 225 - 280
Target Start/End: Complemental strand, 31592156 - 31592101
Alignment:
Q  225 gattctgacattcaatcaaatatctagatgcttgtcttcaactccaatgaaaaata 280  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31592156 gattctgacattcaatcaaatatctagatgcttgtcttcaactccaatgaaaaata 31592101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University