View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_low_48 (Length: 280)
Name: NF8085_low_48
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_low_48 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 280
Target Start/End: Original strand, 47233797 - 47234080
Alignment:
| Q |
1 |
ctttgatgagtttgattaagtacttaatcatcatctaataatctagtaccattagttattttatatttaaatagataggnnnnnnnggaaagaagagagt |
100 |
Q |
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| T |
47233797 |
ctttgatgagtttgattaagtacttaatcatcatctaataatctagtaccattagttattttatatttaaatagataggaaaaaaaggaaagaagagagt |
47233896 |
T |
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| Q |
101 |
tatt----tatatagtaaactcacggcggttaacaaccctttcctcagtaacatgggtggttggtgcagaacgcattgcaatcctatcgttgcatttggg |
196 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47233897 |
tattaatttatatagtaaactcacggcggttaacaaccctttcctcagtaacatgggtggttggtgcagaacgcattgcaatcctatcgttgcatttggg |
47233996 |
T |
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| Q |
197 |
agtggagctagttcgaatcctatactctggattcatgcagtggctaggtgcctgaagaaaatcaatgaaacaataaagtaaatt |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47233997 |
agtggagctagttcgaatcctatactctggattcatgcagtggctaggtgcctgaagaaaatcaatgaaacaataaagtaaatt |
47234080 |
T |
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