View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8085_low_50 (Length: 272)
Name: NF8085_low_50
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_low_50 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 144; Significance: 9e-76; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 23 - 250
Target Start/End: Complemental strand, 3096114 - 3095886
Alignment:
| Q |
23 |
tatattattctcgacgagctagtgcaaggagcactataacactcatagcaacacgnnnnnnntataagtaggcgccgcatatagacggaacaccaaacaa |
122 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| | ||||||| || ||||||||| || ||||||||||||||||| |||| |
|
|
| T |
3096114 |
tatattattctcgacgagctagtgcaaggagcactataacactcacaacaacacgaaaaaaatacaagtaggcgtcgtatatagacggaacaccatacaa |
3096015 |
T |
|
| Q |
123 |
tttcataaaaaccccacaaaacccaaactaaggtagcgaggccgacatatacatgctaagaaatgcacgaata-ccctgcctcataccttccggcgaaac |
221 |
Q |
| |
|
| ||||||||| |||||||||| |||| |||| ||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||| ||||||| |
|
|
| T |
3096014 |
tctcataaaaatcccacaaaactcaaattaagatagtgaggccgacatatacatgctaagaaatgcacgcatacccctgcctcataccttccagcgaaac |
3095915 |
T |
|
| Q |
222 |
aaaaaccgaccaccaccaaatcccagctg |
250 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
3095914 |
aaaaaccgaccaccaccaaatcccagctg |
3095886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 87; Significance: 9e-42; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 24 - 250
Target Start/End: Original strand, 43503653 - 43503880
Alignment:
| Q |
24 |
atattattctcgacgagctagtgcaaggagcactataacactcatagcaacacgnnnnnnntataagtaggcgccgcatatagacggaacaccaaacaat |
123 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| |||||| | || || |||||||||||||| |||||||||||| ||| |
|
|
| T |
43503653 |
atattattctcgatgagctagtgcaaggagcactataacactcgcggcaacatggaaaaaatacaaagaggcgccgcatatatacggaacaccaaccaac |
43503752 |
T |
|
| Q |
124 |
ttcataaaaaccccacaaaacccaaactaaggtagcgaggccgacatatacatgctaagaaatgcacgaata-ccctgcctcataccttccggcgaaaca |
222 |
Q |
| |
|
||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||| ||||| ||| |||||||||| |||| | ||||| || |
|
|
| T |
43503753 |
cccataaaaaccccacaaaacccgggctaaggtagtgaggccgacatatacatgctaagaaaagcacgtatacccctgcctcacacctagcagcgaagca |
43503852 |
T |
|
| Q |
223 |
aaaaccgaccaccaccaaatcccagctg |
250 |
Q |
| |
|
|||| | ||||||||||| |||||||| |
|
|
| T |
43503853 |
aaaatccaccaccaccaatgcccagctg |
43503880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 27 - 66
Target Start/End: Complemental strand, 18057979 - 18057940
Alignment:
| Q |
27 |
ttattctcgacgagctagtgcaaggagcactataacactc |
66 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
18057979 |
ttattctcgacgagctagtgcaaggagcactataaaactc |
18057940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University