View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_low_57 (Length: 249)
Name: NF8085_low_57
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_low_57 |
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Alignment Details
Target: chr5 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 194360 - 194594
Alignment:
| Q |
1 |
cttctgcttttctttggattcaatcatgtgcttccttctcttcttactatcattactatcataaattagtttctttcccttctcaatcccatccccatat |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
194360 |
cttctgctttgctttggattcaatcatgtgcttccttctctacttactatcattactatcataaattagtttctttcccttctcaatcccatccccatat |
194459 |
T |
|
| Q |
101 |
tcatgttcagctgccatgtatgcctctgttgaattatgatcaagtccctagcttcttgtatcccaccactccctatccatttcttagaagggcgatcctg |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
194460 |
tcatgttcagctgccatgtatgcctctgttgaattatgatcaagtccctagcttcttgtatcccaccactccctatccatttcttagaagggcgatcttg |
194559 |
T |
|
| Q |
201 |
ggacagttccaaaacttgcataaatctttctgtat |
235 |
Q |
| |
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|||||||||||||||||||||||| |||||||||| |
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| T |
194560 |
ggacagttccaaaacttgcataaacctttctgtat |
194594 |
T |
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