View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_low_62 (Length: 228)
Name: NF8085_low_62
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_low_62 |
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Alignment Details
Target: chr1 (Bit Score: 164; Significance: 8e-88; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 17 - 217
Target Start/End: Original strand, 7809750 - 7809950
Alignment:
| Q |
17 |
cacatggctccatgtattatttcaattatttgattattatcgctatggagctttttctacacatgtatttatgaattatatgtacatacttaatttaggt |
116 |
Q |
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| T |
7809750 |
cacatggctccatgtattgtttcaattatttgattattatcgctatggagctttttctacacatgtatttatgaattatatgtacatacttaatttaggt |
7809849 |
T |
|
| Q |
117 |
gtcattttctccttcnnnnnnnggtgtcatttttaaaattaagtcaaaacatttgagctgagtatattaagaggaaaaataattaagaggtcaacaccaa |
216 |
Q |
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|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||| |
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| T |
7809850 |
gtcattttttccttcaaaaaaaggtgtcatttttaaaattaagtcaaaacatttgagctgagtatatgaagaggaaaaataattaagaggtcaacatcaa |
7809949 |
T |
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| Q |
217 |
a |
217 |
Q |
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| T |
7809950 |
a |
7809950 |
T |
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