View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_low_63 (Length: 225)
Name: NF8085_low_63
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_low_63 |
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Alignment Details
Target: chr4 (Bit Score: 119; Significance: 6e-61; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 91 - 213
Target Start/End: Complemental strand, 40747109 - 40746987
Alignment:
| Q |
91 |
tttcctatttcctgcaaacgattaaacacataatttctctaagagatagaaaagcattgttttgagtagtttatctcaataatttccaagaaatacttga |
190 |
Q |
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| T |
40747109 |
tttcctatttcctgcaaacgattaaacacataatttctctaagagatagaaaagcattgttttgagtagtttatctcaataatttccaagaaatacttga |
40747010 |
T |
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| Q |
191 |
gttccttgagatccttcatctca |
213 |
Q |
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| T |
40747009 |
gttcctcgagatccttcatctca |
40746987 |
T |
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Target: chr4; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 17 - 91
Target Start/End: Complemental strand, 40747378 - 40747304
Alignment:
| Q |
17 |
catcaatgtaagcctccctaattaagttttcacctcttttaaacaatactattatctctggactggctttgagat |
91 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
40747378 |
catcaatgtaagcctccctaattaagtttccacctcttttaaacaatactattctctctggactggctttgagat |
40747304 |
T |
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