View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8085_low_68 (Length: 212)
Name: NF8085_low_68
Description: NF8085
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8085_low_68 |
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Alignment Details
Target: chr7 (Bit Score: 180; Significance: 2e-97; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 16 - 195
Target Start/End: Complemental strand, 48902212 - 48902033
Alignment:
| Q |
16 |
aatatggcagacagacaactccgacagataagattaaagaagcgcataggagagtgatggttgcaaaccatcccgatgctggtggcagccattatctcgc |
115 |
Q |
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| T |
48902212 |
aatatggcagacagacaactccgacagataagattaaagaagcgcataggagagtgatggttgcaaaccatcccgatgctggtggcagccattatctcgc |
48902113 |
T |
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| Q |
116 |
ttctaaaatcaatgaagcaaaagatatgatgattggaaagaccaagggtggtggatcagcattttgaagccgtgtaatct |
195 |
Q |
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| T |
48902112 |
ttctaaaatcaatgaagcaaaagatatgatgattggaaagaccaagggtggtggatcagcattttgaagccgtgtaatct |
48902033 |
T |
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Target: chr1 (Bit Score: 85; Significance: 1e-40; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 44 - 184
Target Start/End: Original strand, 28715072 - 28715212
Alignment:
| Q |
44 |
taagattaaagaagcgcataggagagtgatggttgcaaaccatcccgatgctggtggcagccattatctcgcttctaaaatcaatgaagcaaaagatatg |
143 |
Q |
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| T |
28715072 |
taagattaaagaagcacataggagaatgatggttgcaaaccatccagatgctggtggtagccatcatgttgcttccaaaatcaatgaagcaaaagatatg |
28715171 |
T |
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| Q |
144 |
atgattggaaagaccaagggtggtggatcagcattttgaag |
184 |
Q |
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| T |
28715172 |
ttgcttggaaagaccaaaggtggtggaagtgcattttgaag |
28715212 |
T |
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